Difference between revisions of "RXN-10974"
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(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...") |
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylas...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction OXALODECARB-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** malate dehydrogenase (decarboxylating) (nad+) |
+ | ** oxaloacetate decarboxylase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40] |
+ | ** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3] | ||
+ | ** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ11643]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ14191]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13180]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): |
− | + | ** '''2''' reactions found over '''8''' reactions in the full pathway | |
− | + | * [[PWY-6339]], syringate degradation: | |
− | + | ** '''2''' reactions found over '''9''' reactions in the full pathway | |
− | + | * [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: | |
− | ** ''' | + | ** '''2''' reactions found over '''6''' reactions in the full pathway |
− | |||
− | |||
− | * [[PWY- | ||
− | ** ''' | ||
− | * [[ | ||
− | |||
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
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− | |||
== External links == | == External links == | ||
− | + | * RHEA: | |
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217] |
− | |||
− | |||
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P13187 P13187] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P13155 P13155] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P13156 P13156] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q58628 Q58628] |
− | + | {{#set: direction=left-to-right}} | |
− | + | {{#set: common-name=malate dehydrogenase (decarboxylating) (nad+)|oxaloacetate decarboxylase}} | |
− | + | {{#set: ec-number=ec-1.1.1.40|ec-1.1.1.38|ec-4.1.1.3}} | |
− | + | {{#set: nb gene associated=3}} | |
− | + | {{#set: nb pathway associated=3}} | |
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− | {{#set: direction= | ||
− | {{#set: common-name= | ||
− | {{#set: ec-number=ec- | ||
− | {{#set: nb gene associated= | ||
− | {{#set: nb pathway associated= | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:28, 15 January 2021
Contents
Reaction OXALODECARB-RXN
- direction:
- left-to-right
- common-name:
- malate dehydrogenase (decarboxylating) (nad+)
- oxaloacetate decarboxylase
- ec-number:
Reaction formula
- 1 OXALACETIC_ACID[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 PYRUVATE[c]
Gene(s) associated with this reaction
- Gene: SJ11643
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ14191
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13180
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
- 2 reactions found over 8 reactions in the full pathway
- PWY-6339, syringate degradation:
- 2 reactions found over 9 reactions in the full pathway
- METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
- 2 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links