Difference between revisions of "RXN0-7230"
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(Created page with "Category:reaction == Reaction RXN-17011 == * direction: ** left-to-right * common-name: ** 1-acylglycerol-3-phosphate o-acyltransferase * ec-number: ** [http://enzyme.expa...") |
(Created page with "Category:reaction == Reaction FPPSYN-RXN == * direction: ** left-to-right * common-name: ** farnesyl diphosphate synthase ** geranyltranstransferase * ec-number: ** [http:...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction FPPSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** farnesyl diphosphate synthase |
+ | ** geranyltranstransferase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ20033]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ09945]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ10346]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ02885]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ00173]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6859]], all-trans-farnesol biosynthesis: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7736]], stellatic acid biosynthesis: | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7102]], bisabolene biosynthesis (engineered): | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7721]], methyl phomopsenoate biosynthesis: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR99634 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P08524 P08524] | ||
+ | ** [http://www.uniprot.org/uniprot/P05369 P05369] | ||
+ | ** [http://www.uniprot.org/uniprot/P14324 P14324] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32] | ||
+ | ** [http://www.uniprot.org/uniprot/P45204 P45204] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0] | ||
+ | ** [http://www.uniprot.org/uniprot/P49350 P49350] | ||
+ | ** [http://www.uniprot.org/uniprot/P22939 P22939] | ||
+ | ** [http://www.uniprot.org/uniprot/Q08291 Q08291] | ||
+ | ** [http://www.uniprot.org/uniprot/P49349 P49349] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09152 Q09152] | ||
+ | ** [http://www.uniprot.org/uniprot/P49351 P49351] | ||
+ | ** [http://www.uniprot.org/uniprot/P49352 P49352] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43315 Q43315] | ||
+ | ** [http://www.uniprot.org/uniprot/O24241 O24241] | ||
+ | ** [http://www.uniprot.org/uniprot/O24242 O24242] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92334 Q92334] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92218 Q92218] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92235 Q92235] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92250 Q92250] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4] | ||
+ | ** [http://www.uniprot.org/uniprot/P49353 P49353] | ||
+ | ** [http://www.uniprot.org/uniprot/O04882 O04882] | ||
+ | ** [http://www.uniprot.org/uniprot/O65004 O65004] | ||
+ | ** [http://www.uniprot.org/uniprot/O14230 O14230] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=geranyltranstransferase|farnesyl diphosphate synthase}} |
− | {{#set: ec-number=ec-2. | + | {{#set: ec-number=ec-2.5.1.10}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=5}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 08:33, 15 March 2021
Contents
Reaction FPPSYN-RXN
- direction:
- left-to-right
- common-name:
- farnesyl diphosphate synthase
- geranyltranstransferase
- ec-number:
Reaction formula
- 1 DELTA3-ISOPENTENYL-PP[c] + 1 GERANYL-PP[c] => 1 FARNESYL-PP[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ20033
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ09945
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10346
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02885
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00173
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6859, all-trans-farnesol biosynthesis:
- 3 reactions found over 4 reactions in the full pathway
- PWY-7736, stellatic acid biosynthesis:
- 3 reactions found over 8 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered):
- 3 reactions found over 6 reactions in the full pathway
- PWY-7721, methyl phomopsenoate biosynthesis:
- 2 reactions found over 4 reactions in the full pathway
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links