Difference between revisions of "RXN-12579"
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(Created page with "Category:reaction == Reaction ORPDC == * direction: ** left-to-right * common-name: ** orotidine-5'-phosphate decarboxylase == Reaction formula == * 1.0 OROTIDINE-5-PHOS...") |
(Created page with "Category:reaction == Reaction RXNN-404 == * direction: ** left-to-right * common-name: ** amidase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.4 ec-3.5.1.4] == React...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXNN-404 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** amidase |
| + | * ec-number: | ||
| + | ** [http://enzyme.expasy.org/EC/3.5.1.4 ec-3.5.1.4] | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 | + | * 1 [[CPD-237]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ22527]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
| + | * Gene: [[SJ01848]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| + | * Gene: [[SJ11012]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ16279]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria): | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-581]], indole-3-acetate biosynthesis II: | ||
| + | ** '''5''' reactions found over '''12''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * category: [[orthology]]; source: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR95814 | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34372 34372] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=amidase}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-3.5.1.4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=4}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=3}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=orthology|annotation}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:34, 15 March 2021
Contents
Reaction RXNN-404
- direction:
- left-to-right
- common-name:
- amidase
- ec-number:
Reaction formula
- 1 CPD-237[c] + 1 WATER[c] => 1 AMMONIUM[c] + 1 INDOLE_ACETATE_AUXIN[c]
Gene(s) associated with this reaction
- Gene: SJ22527
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ01848
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11012
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16279
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5025, indole-3-acetate biosynthesis IV (bacteria):
- 1 reactions found over 2 reactions in the full pathway
- PWY-3161, indole-3-acetate biosynthesis III (bacteria):
- 2 reactions found over 2 reactions in the full pathway
- PWY-581, indole-3-acetate biosynthesis II:
- 5 reactions found over 12 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
