Difference between revisions of "RXN-17794"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DXPREDISOM-RXN == * direction: ** reversible * common-name: ** 1-deoxy-d-xylulose 5-phosphate reductoisomerase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction SULFITE-REDUCT-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1.2 ec-1.8.1.2] == Reaction formula == *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DXPREDISOM-RXN ==
+
== Reaction SULFITE-REDUCT-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** 1-deoxy-d-xylulose 5-phosphate reductoisomerase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.267 ec-1.1.1.267]
+
** [http://enzyme.expasy.org/EC/1.8.1.2 ec-1.8.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 3 [[NADPH]][c] '''+''' 5 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''=>''' 1 [[HS]][c] '''+''' 3 [[NADP]][c] '''+''' 3 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11908]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
+
* [[SO4ASSIM-PWY]], assimilatory sulfate reduction I:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
+
* [[PWY-6683]], assimilatory sulfate reduction III:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR104650
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13720 13720]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13803 13803]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00858 R00858]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=1-deoxy-d-xylulose 5-phosphate reductoisomerase}}
+
** [http://www.uniprot.org/uniprot/P38039 P38039]
−
{{#set: ec-number=ec-1.1.1.267}}
+
** [http://www.uniprot.org/uniprot/P17845 P17845]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9JUD9 Q9JUD9]
 +
** [http://www.uniprot.org/uniprot/Q9JUD8 Q9JUD8]
 +
** [http://www.uniprot.org/uniprot/O32214 O32214]
 +
** [http://www.uniprot.org/uniprot/P38038 P38038]
 +
** [http://www.uniprot.org/uniprot/Q59396 Q59396]
 +
** [http://www.uniprot.org/uniprot/P17846 P17846]
 +
** [http://www.uniprot.org/uniprot/P52674 P52674]
 +
** [http://www.uniprot.org/uniprot/P39692 P39692]
 +
{{#set: direction=left-to-right}}
 +
{{#set: ec-number=ec-1.8.1.2}}
 +
{{#set: nb gene associated=0}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 08:34, 15 March 2021

Reaction SULFITE-REDUCT-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SO4ASSIM-PWY, assimilatory sulfate reduction I:
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-6683, assimilatory sulfate reduction III:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17794&oldid=128001"