Difference between revisions of "FBA"

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(Created page with "Category:reaction == Reaction RXN-9912 == * direction: ** left-to-right * common-name: ** 4-chlorosalicylate monooxygenase ** salicylate 1-monooxygenase * ec-number: ** [h...")
(Created page with "Category:reaction == Reaction GDPPYPHOSKIN-RXN == * direction: ** left-to-right * common-name: ** gdp pyrophosphokinase ** gtp diphosphokinase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9912 ==
+
== Reaction GDPPYPHOSKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 4-chlorosalicylate monooxygenase
+
** gdp pyrophosphokinase
−
** salicylate 1-monooxygenase
+
** gtp diphosphokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.13.1 ec-1.14.13.1]
+
** [http://enzyme.expasy.org/EC/2.7.6.5 ec-2.7.6.5]
−
* synonymous:
 
−
** 4-chlorosalicylate hydroxylase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-10576]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-9152]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GUANOSINE-5DP-3DP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21101]]
+
* Gene: [[SJ13961]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10100]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07200]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14690]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6107]], chlorosalicylate degradation:
+
* [[PPGPPMET-PWY]], ppGpp metabolism:
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100088
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28099 28099]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4-chlorosalicylate monooxygenase|salicylate 1-monooxygenase}}
+
{{#set: common-name=gdp pyrophosphokinase|gtp diphosphokinase}}
−
{{#set: ec-number=ec-1.14.13.1}}
+
{{#set: ec-number=ec-2.7.6.5}}
−
{{#set: synonymous=4-chlorosalicylate hydroxylase}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Revision as of 08:35, 15 March 2021

Reaction GDPPYPHOSKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • gdp pyrophosphokinase
    • gtp diphosphokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100088
  • RHEA:





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