Difference between revisions of "RXN-9538"
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(Created page with "Category:reaction == Reaction RXN-3341 == * direction: ** left-to-right * common-name: ** 6-phosphogluconate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...") |
(Created page with "Category:reaction == Reaction GLUTAMINESYN-RXN == * direction: ** left-to-right * common-name: ** glutamine synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.1.2...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GLUTAMINESYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** glutamine synthetase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.3.1.2 ec-6.3.1.2] |
+ | * synonymous: | ||
+ | ** type i glutamate--ammonia ligase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ03939]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08357]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12766]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-381]], nitrate reduction II (assimilatory): |
− | ** '''4''' reactions found over ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
+ | * [[PWY-5675]], nitrate reduction V (assimilatory): | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY490-3]], nitrate reduction VI (assimilatory): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GLNSYN-PWY]], L-glutamine biosynthesis I: | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-6964]], ammonia assimilation cycle II: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6963]], ammonia assimilation cycle I: | ||
+ | ** '''4''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR100024 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16169 16169] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00253 R00253] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P15103 P15103] | ||
+ | ** [http://www.uniprot.org/uniprot/P15124 P15124] | ||
+ | ** [http://www.uniprot.org/uniprot/P15623 P15623] | ||
+ | ** [http://www.uniprot.org/uniprot/P21154 P21154] | ||
+ | ** [http://www.uniprot.org/uniprot/P45627 P45627] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59982 Q59982] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M314 Q7M314] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60182 Q60182] | ||
+ | ** [http://www.uniprot.org/uniprot/P04078 P04078] | ||
+ | ** [http://www.uniprot.org/uniprot/P00964 P00964] | ||
+ | ** [http://www.uniprot.org/uniprot/P22248 P22248] | ||
+ | ** [http://www.uniprot.org/uniprot/P07804 P07804] | ||
+ | ** [http://www.uniprot.org/uniprot/P13564 P13564] | ||
+ | ** [http://www.uniprot.org/uniprot/P12425 P12425] | ||
+ | ** [http://www.uniprot.org/uniprot/P19064 P19064] | ||
+ | ** [http://www.uniprot.org/uniprot/P16580 P16580] | ||
+ | ** [http://www.uniprot.org/uniprot/P10656 P10656] | ||
+ | ** [http://www.uniprot.org/uniprot/P11600 P11600] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A1P6 P0A1P6] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A9C5 P0A9C5] | ||
+ | ** [http://www.uniprot.org/uniprot/P00965 P00965] | ||
+ | ** [http://www.uniprot.org/uniprot/P04771 P04771] | ||
+ | ** [http://www.uniprot.org/uniprot/P04770 P04770] | ||
+ | ** [http://www.uniprot.org/uniprot/P15102 P15102] | ||
+ | ** [http://www.uniprot.org/uniprot/P10583 P10583] | ||
+ | ** [http://www.uniprot.org/uniprot/P23712 P23712] | ||
+ | ** [http://www.uniprot.org/uniprot/P15105 P15105] | ||
+ | ** [http://www.uniprot.org/uniprot/P08282 P08282] | ||
+ | ** [http://www.uniprot.org/uniprot/P08281 P08281] | ||
+ | ** [http://www.uniprot.org/uniprot/P07694 P07694] | ||
+ | ** [http://www.uniprot.org/uniprot/P09606 P09606] | ||
+ | ** [http://www.uniprot.org/uniprot/P14654 P14654] | ||
+ | ** [http://www.uniprot.org/uniprot/P14655 P14655] | ||
+ | ** [http://www.uniprot.org/uniprot/P14656 P14656] | ||
+ | ** [http://www.uniprot.org/uniprot/P22878 P22878] | ||
+ | ** [http://www.uniprot.org/uniprot/P19432 P19432] | ||
+ | ** [http://www.uniprot.org/uniprot/P15106 P15106] | ||
+ | ** [http://www.uniprot.org/uniprot/P19904 P19904] | ||
+ | ** [http://www.uniprot.org/uniprot/P14636 P14636] | ||
+ | ** [http://www.uniprot.org/uniprot/P04772 P04772] | ||
+ | ** [http://www.uniprot.org/uniprot/P09826 P09826] | ||
+ | ** [http://www.uniprot.org/uniprot/P05457 P05457] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSU6 Q9JSU6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PPK8 Q9PPK8] | ||
+ | ** [http://www.uniprot.org/uniprot/O66514 O66514] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8X7G0 Q8X7G0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CDL9 Q9CDL9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05650 Q05650] | ||
+ | ** [http://www.uniprot.org/uniprot/P43794 P43794] | ||
+ | ** [http://www.uniprot.org/uniprot/P31592 P31592] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27747 Q27747] | ||
+ | ** [http://www.uniprot.org/uniprot/P12424 P12424] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04831 Q04831] | ||
+ | ** [http://www.uniprot.org/uniprot/P24099 P24099] | ||
+ | ** [http://www.uniprot.org/uniprot/O04998 O04998] | ||
+ | ** [http://www.uniprot.org/uniprot/O04999 O04999] | ||
+ | ** [http://www.uniprot.org/uniprot/P20479 P20479] | ||
+ | ** [http://www.uniprot.org/uniprot/O75014 O75014] | ||
+ | ** [http://www.uniprot.org/uniprot/P23794 P23794] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43127 Q43127] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9FHR0 Q9FHR0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9C8C7 Q9C8C7] | ||
+ | ** [http://www.uniprot.org/uniprot/P28786 P28786] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02154 Q02154] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05542 Q05542] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42624 Q42624] | ||
+ | ** [http://www.uniprot.org/uniprot/P43518 P43518] | ||
+ | ** [http://www.uniprot.org/uniprot/P52783 P52783] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43759 Q43759] | ||
+ | ** [http://www.uniprot.org/uniprot/P38559 P38559] | ||
+ | ** [http://www.uniprot.org/uniprot/P38560 P38560] | ||
+ | ** [http://www.uniprot.org/uniprot/P38561 P38561] | ||
+ | ** [http://www.uniprot.org/uniprot/P38562 P38562] | ||
+ | ** [http://www.uniprot.org/uniprot/P38563 P38563] | ||
+ | ** [http://www.uniprot.org/uniprot/P25462 P25462] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42625 Q42625] | ||
+ | ** [http://www.uniprot.org/uniprot/P46410 P46410] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42802 Q42802] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42623 Q42623] | ||
+ | ** [http://www.uniprot.org/uniprot/Q53045 Q53045] | ||
+ | ** [http://www.uniprot.org/uniprot/P32288 P32288] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43066 Q43066] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59195 Q59195] | ||
+ | ** [http://www.uniprot.org/uniprot/P51118 P51118] | ||
+ | ** [http://www.uniprot.org/uniprot/P51119 P51119] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42950 Q42950] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42951 Q42951] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07939 Q07939] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43760 Q43760] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42688 Q42688] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42689 Q42689] | ||
+ | ** [http://www.uniprot.org/uniprot/O22504 O22504] | ||
+ | ** [http://www.uniprot.org/uniprot/O22505 O22505] | ||
+ | ** [http://www.uniprot.org/uniprot/O22506 O22506] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59972 Q59972] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UWN1 Q9UWN1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RDW7 Q9RDW7] | ||
+ | ** [http://www.uniprot.org/uniprot/P43386 P43386] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A040 P0A040] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=glutamine synthetase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.3.1.2}} |
− | {{#set: nb gene associated= | + | {{#set: synonymous=type i glutamate--ammonia ligase}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=7}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:36, 15 March 2021
Contents
Reaction GLUTAMINESYN-RXN
- direction:
- left-to-right
- common-name:
- glutamine synthetase
- ec-number:
- synonymous:
- type i glutamate--ammonia ligase
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ03939
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08357
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12766
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-381, nitrate reduction II (assimilatory):
- 3 reactions found over 3 reactions in the full pathway
- PWY-5675, nitrate reduction V (assimilatory):
- 4 reactions found over 4 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY490-3, nitrate reduction VI (assimilatory):
- 3 reactions found over 4 reactions in the full pathway
- GLNSYN-PWY, L-glutamine biosynthesis I:
- 1 reactions found over 1 reactions in the full pathway
- PWY-6964, ammonia assimilation cycle II:
- 2 reactions found over 2 reactions in the full pathway
- PWY-6963, ammonia assimilation cycle I:
- 4 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR100024
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P15103
- P15124
- P15623
- P21154
- P45627
- Q59982
- Q7M314
- Q60182
- P04078
- P00964
- P22248
- P07804
- P13564
- P12425
- P19064
- P16580
- P10656
- P11600
- P0A1P6
- P0A9C5
- P00965
- P04771
- P04770
- P15102
- P10583
- P23712
- P15105
- P08282
- P08281
- P07694
- P09606
- P14654
- P14655
- P14656
- P22878
- P19432
- P15106
- P19904
- P14636
- P04772
- P09826
- P05457
- Q9JSU6
- Q9PPK8
- O66514
- Q8X7G0
- Q9CDL9
- Q05650
- P43794
- P31592
- Q27747
- P12424
- Q04831
- P24099
- O04998
- O04999
- P20479
- O75014
- P23794
- Q43127
- Q9FHR0
- Q9C8C7
- P28786
- Q02154
- Q05542
- Q42624
- P43518
- P52783
- Q43759
- P38559
- P38560
- P38561
- P38562
- P38563
- P25462
- Q42625
- P46410
- Q42802
- Q42623
- Q53045
- P32288
- Q43066
- Q59195
- P51118
- P51119
- Q42950
- Q42951
- Q07939
- Q43760
- Q42688
- Q42689
- O22504
- O22505
- O22506
- Q59972
- Q9UWN1
- Q9RDW7
- P43386
- P0A040