Difference between revisions of "RXN-10959"

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(Created page with "Category:reaction == Reaction PEPCARBOX-RXN == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * direction: ** left-to-right * common-name: ** adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/E...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PEPCARBOX-RXN ==
+
== Reaction SAMDECARB-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoenolpyruvate carboxylase
+
** adenosylmethionine decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31]
+
** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04004]]
+
* Gene: [[SJ07458]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16226]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ARGSPECAT-PWY]], spermine biosynthesis:
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:
+
* [[PWY-6834]], spermidine biosynthesis III:
−
** '''9''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95455
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P28594 P28594]
+
** [http://www.uniprot.org/uniprot/P82184 P82184]
−
** [http://www.uniprot.org/uniprot/P43920 P43920]
+
** [http://www.uniprot.org/uniprot/P21182 P21182]
−
** [http://www.uniprot.org/uniprot/P29195 P29195]
+
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
−
** [http://www.uniprot.org/uniprot/P51059 P51059]
+
** [http://www.uniprot.org/uniprot/P17707 P17707]
−
** [http://www.uniprot.org/uniprot/P00864 P00864]
+
** [http://www.uniprot.org/uniprot/P28918 P28918]
−
** [http://www.uniprot.org/uniprot/P12880 P12880]
+
** [http://www.uniprot.org/uniprot/P17708 P17708]
−
** [http://www.uniprot.org/uniprot/P10490 P10490]
+
** [http://www.uniprot.org/uniprot/P50243 P50243]
−
** [http://www.uniprot.org/uniprot/P16097 P16097]
+
** [http://www.uniprot.org/uniprot/P46255 P46255]
−
** [http://www.uniprot.org/uniprot/P27154 P27154]
+
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
−
** [http://www.uniprot.org/uniprot/P06516 P06516]
+
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
−
** [http://www.uniprot.org/uniprot/Q43267 Q43267]
+
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
−
** [http://www.uniprot.org/uniprot/Q41197 Q41197]
+
** [http://www.uniprot.org/uniprot/P79888 P79888]
−
** [http://www.uniprot.org/uniprot/P29194 P29194]
+
** [http://www.uniprot.org/uniprot/O04009 O04009]
−
** [http://www.uniprot.org/uniprot/P30694 P30694]
+
** [http://www.uniprot.org/uniprot/O24575 O24575]
−
** [http://www.uniprot.org/uniprot/P15804 P15804]
+
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
−
** [http://www.uniprot.org/uniprot/Q43268 Q43268]
+
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
−
** [http://www.uniprot.org/uniprot/Q01647 Q01647]
+
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
−
** [http://www.uniprot.org/uniprot/Q01648 Q01648]
+
** [http://www.uniprot.org/uniprot/O49972 O49972]
−
** [http://www.uniprot.org/uniprot/Q02735 Q02735]
+
** [http://www.uniprot.org/uniprot/O65354 O65354]
−
** [http://www.uniprot.org/uniprot/Q02909 Q02909]
+
** [http://www.uniprot.org/uniprot/O02655 O02655]
−
** [http://www.uniprot.org/uniprot/Q42730 Q42730]
 
−
** [http://www.uniprot.org/uniprot/Q41198 Q41198]
 
−
** [http://www.uniprot.org/uniprot/P51063 P51063]
 
−
** [http://www.uniprot.org/uniprot/Q40103 Q40103]
 
−
** [http://www.uniprot.org/uniprot/Q40104 Q40104]
 
−
** [http://www.uniprot.org/uniprot/Q40105 Q40105]
 
−
** [http://www.uniprot.org/uniprot/Q40102 Q40102]
 
−
** [http://www.uniprot.org/uniprot/Q41836 Q41836]
 
−
** [http://www.uniprot.org/uniprot/O22118 O22118]
 
−
** [http://www.uniprot.org/uniprot/O22119 O22119]
 
−
** [http://www.uniprot.org/uniprot/O48623 O48623]
 
−
** [http://www.uniprot.org/uniprot/Q42634 Q42634]
 
−
** [http://www.uniprot.org/uniprot/O23946 O23946]
 
−
** [http://www.uniprot.org/uniprot/O23947 O23947]
 
−
** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoenolpyruvate carboxylase}}
+
{{#set: common-name=adenosylmethionine decarboxylase}}
−
{{#set: ec-number=ec-4.1.1.31}}
+
{{#set: ec-number=ec-4.1.1.50}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:36, 15 March 2021

Reaction SAMDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • adenosylmethionine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ARGSPECAT-PWY, spermine biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • BSUBPOLYAMSYN-PWY, spermidine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6834, spermidine biosynthesis III:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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