Difference between revisions of "RXN-13304"
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(Created page with "Category:reaction == Reaction RXN-13162 == * direction: ** left-to-right * common-name: ** squalene synthase ** farnesyl-diphosphate farnesyltransferase * ec-number: ** [h...") |
(Created page with "Category:reaction == Reaction RXN-5581 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.5 ec-1.2.1.5] == Reaction formula == * 1 INDOL...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-5581 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
− | |||
− | |||
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2 | + | ** [http://enzyme.expasy.org/EC/1.2.1.5 ec-1.2.1.5] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[INDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[INDOLE_ACETATE_AUXIN]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ06456]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06470]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 20: | Line 19: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-3162]], L-tryptophan degradation V (side chain pathway): |
− | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''13''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | * | + | * METANETX-RXN : MNXR121822 |
− | |||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30868 30868] |
− | |||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | + | {{#set: ec-number=ec-1.2.1.5}} | |
− | {{#set: ec-number=ec-2 | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:37, 15 March 2021
Contents
Reaction RXN-5581
- direction:
- left-to-right
- ec-number:
Reaction formula
- 1 INDOLE_ACETALDEHYDE[c] + 1 NAD-P-OR-NOP[c] + 1 WATER[c] => 1 INDOLE_ACETATE_AUXIN[c] + 1 NADH-P-OR-NOP[c] + 2 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ06456
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06470
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-3162, L-tryptophan degradation V (side chain pathway):
- 2 reactions found over 13 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR121822
- RHEA: