Difference between revisions of "RXN-12567"
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(Created page with "Category:reaction == Reaction RXN-7810 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.137 ec-2.5.1.137] == Reaction formula == * 1 C...") |
(Created page with "Category:reaction == Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** diphosphomevalonate decarboxylase * ec-number: ** [ht...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** diphosphomevalonate decarboxylase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.1.33 ec-4.1.1.33] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[CPD-641]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ05356]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY-7391]], isoprene biosynthesis II (engineered): |
| − | ** ''' | + | ** '''7''' reactions found over '''8''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-922]], mevalonate pathway I (eukaryotes and bacteria): |
| − | ** ''' | + | ** '''7''' reactions found over '''7''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR97776 | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23733 23733] |
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P32377 P32377] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9U294 Q9U294] | ||
| + | ** [http://www.uniprot.org/uniprot/O13963 O13963] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9M381 Q9M381] | ||
| + | ** [http://www.uniprot.org/uniprot/O23722 O23722] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec- | + | {{#set: common-name=diphosphomevalonate decarboxylase}} |
| + | {{#set: ec-number=ec-4.1.1.33}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=2}} | {{#set: nb pathway associated=2}} | ||
| − | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:38, 15 March 2021
Contents
Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
- direction:
- left-to-right
- common-name:
- diphosphomevalonate decarboxylase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 CPD-641[c] => 1 ADP[c] + 1 CARBON-DIOXIDE[c] + 1 DELTA3-ISOPENTENYL-PP[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ05356
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7391, isoprene biosynthesis II (engineered):
- 7 reactions found over 8 reactions in the full pathway
- PWY-922, mevalonate pathway I (eukaryotes and bacteria):
- 7 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR97776
- RHEA:
- LIGAND-RXN:
- UNIPROT:
