Difference between revisions of "RIBULP3EPIM-RXN"

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(Created page with "Category:reaction == Reaction BIOTINLIG-RXN == * direction: ** left-to-right * common-name: ** biotin-[acetyl-coa-carboxylase] ligase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction 3.1.3.67-RXN == * direction: ** left-to-right * common-name: ** phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase * ec-number: ** [http:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BIOTINLIG-RXN ==
+
== Reaction 3.1.3.67-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** biotin-[acetyl-coa-carboxylase] ligase
+
** phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.15 ec-6.3.4.15]
+
** [http://enzyme.expasy.org/EC/3.1.3.67 ec-3.1.3.67]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[BCCP-L-lysine]][c] '''+''' 1 [[BIOTIN]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[BCCP-biotin-L-lysine]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[PHOSPHATIDYLINOSITOL-345-TRIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10816]]
+
* Gene: [[SJ11880]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06657]]
+
* Gene: [[SJ03263]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19949]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07132]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
+
* [[PWY-6368]], 3-phosphoinositide degradation:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* METANETX-RXN : MNXR102677
−
** [http://www.uniprot.org/uniprot/P06709 P06709]
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/Q9PJ27 Q9PJ27]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25018 25018]
−
** [http://www.uniprot.org/uniprot/Q9CEQ6 Q9CEQ6]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q9CED9 Q9CED9]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04513 R04513]
−
** [http://www.uniprot.org/uniprot/Q9JWI7 Q9JWI7]
 
−
** [http://www.uniprot.org/uniprot/P48445 P48445]
 
−
** [http://www.uniprot.org/uniprot/P72816 P72816]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=biotin-[acetyl-coa-carboxylase] ligase}}
+
{{#set: common-name=phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase}}
−
{{#set: ec-number=ec-6.3.4.15}}
+
{{#set: ec-number=ec-3.1.3.67}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction 3.1.3.67-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6368, 3-phosphoinositide degradation:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102677
  • RHEA:
  • LIGAND-RXN:





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