Difference between revisions of "RXN-11592"
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(Created page with "Category:reaction == Reaction 3.4.17.22-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.17.22 ec-3.4.17.22] == Reaction formula == *...") |
(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan-trna ligase * ec-number: ** [http://enzyme.expasy.o...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** tryptophan-trna ligase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ20749]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ21092]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02283]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[TRNA-CHARGING-PWY]], tRNA charging: | ||
+ | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR124075 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P23381 P23381] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76] | ||
+ | ** [http://www.uniprot.org/uniprot/O84589 O84589] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1] | ||
+ | ** [http://www.uniprot.org/uniprot/P43835 P43835] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2] | ||
+ | ** [http://www.uniprot.org/uniprot/O26352 O26352] | ||
+ | ** [http://www.uniprot.org/uniprot/O51038 O51038] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58810 Q58810] | ||
+ | ** [http://www.uniprot.org/uniprot/O83640 O83640] | ||
+ | ** [http://www.uniprot.org/uniprot/P67590 P67590] | ||
+ | ** [http://www.uniprot.org/uniprot/O67115 O67115] | ||
+ | ** [http://www.uniprot.org/uniprot/P47372 P47372] | ||
+ | ** [http://www.uniprot.org/uniprot/P32921 P32921] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12109 Q12109] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49901 Q49901] | ||
+ | ** [http://www.uniprot.org/uniprot/P75510 P75510] | ||
+ | ** [http://www.uniprot.org/uniprot/O42875 O42875] | ||
+ | ** [http://www.uniprot.org/uniprot/O96771 O96771] | ||
+ | ** [http://www.uniprot.org/uniprot/P17248 P17248] | ||
+ | ** [http://www.uniprot.org/uniprot/P21656 P21656] | ||
+ | ** [http://www.uniprot.org/uniprot/P04803 P04803] | ||
+ | ** [http://www.uniprot.org/uniprot/P00954 P00954] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=tryptophan-trna ligase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.1.1.2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:40, 15 March 2021
Contents
Reaction TRYPTOPHAN--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- tryptophan-trna ligase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ20749
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ21092
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02283
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links