Difference between revisions of "SJ12523"
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(Created page with "Category:gene == Gene SJ13507 == * transcription-direction: ** negative * right-end-position: ** 60754 * left-end-position: ** 57718 * centisome-position: ** 17.238157...") |
(Created page with "Category:gene == Gene SJ12523 == * transcription-direction: ** negative * right-end-position: ** 317108 * left-end-position: ** 305453 * centisome-position: ** 85.384315...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ12523 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 317108 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 305453 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 85.384315 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ADENPRIBOSYLTRAN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[APPRT]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GUANPRIBOSYLTRAN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | + | * [[HPRT]] | |
− | + | ** Category: [[orthology]] | |
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[HYPOXANPRIBOSYLTRAN-RXN]] |
− | ** Category: [[ | ||
− | *** source: [[ | ||
− | * [[RXN | ||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[XPPRT]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[PWY-7807]] |
− | ** '''8''' reactions found over ''' | + | ** '''2''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6610]] |
− | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7805]] |
− | ** ''' | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6605]] |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
+ | * [[P121-PWY]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6599]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6620]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6609]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=317108}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=305453}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=85.384315 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=6}} | {{#set: nb reaction associated=6}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
Latest revision as of 11:01, 18 March 2021
Contents
Gene SJ12523
- transcription-direction:
- negative
- right-end-position:
- 317108
- left-end-position:
- 305453
- centisome-position:
- 85.384315
Organism(s) associated with this gene
Reaction(s) associated
- ADENPRIBOSYLTRAN-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- APPRT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- GUANPRIBOSYLTRAN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- HPRT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- HYPOXANPRIBOSYLTRAN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- XPPRT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-7807
- 2 reactions found over 7 reactions in the full pathway
- PWY-6610
- 2 reactions found over 3 reactions in the full pathway
- PWY-7805
- 2 reactions found over 8 reactions in the full pathway
- PWY-6605
- 1 reactions found over 2 reactions in the full pathway
- P121-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-6599
- 2 reactions found over 2 reactions in the full pathway
- PWY-6620
- 2 reactions found over 2 reactions in the full pathway
- PWY-6609
- 4 reactions found over 4 reactions in the full pathway