Difference between revisions of "SJ07890"

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(Created page with "Category:gene == Gene SJ09475 == * transcription-direction: ** positive * right-end-position: ** 34938 * left-end-position: ** 17492 * centisome-position: ** 43.00113...")
(Created page with "Category:gene == Gene SJ07890 == * transcription-direction: ** negative * right-end-position: ** 27356 * left-end-position: ** 1069 * centisome-position: ** 1.7597576...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09475 ==
+
== Gene SJ07890 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 34938
+
** 27356
 
* left-end-position:
 
* left-end-position:
−
** 17492
+
** 1069
 
* centisome-position:
 
* centisome-position:
−
** 43.00113    
+
** 1.7597576    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
+
* [[6.1.1.24-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
+
* [[GLURS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
+
* [[RXN-9386]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[GLYSYN-ALA-PWY]]
+
* [[PWY-5188]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6922]]
+
* [[TRNA-CHARGING-PWY]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[ARGININE-SYN4-PWY]]
+
* [[PWY-5921]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-3341]]
+
{{#set: transcription-direction=negative}}
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
{{#set: right-end-position=27356}}
−
* [[PWY-6344]]
+
{{#set: left-end-position=1069}}
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
{{#set: centisome-position=1.7597576   }}
−
* [[PWY-4981]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ARGASEDEG-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=34938}}
 
−
{{#set: left-end-position=17492}}
 
−
{{#set: centisome-position=43.00113   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=3}}
 
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=9}}
+
{{#set: nb pathway associated=3}}

Latest revision as of 11:06, 18 March 2021

Gene SJ07890

  • transcription-direction:
    • negative
  • right-end-position:
    • 27356
  • left-end-position:
    • 1069
  • centisome-position:
    • 1.7597576

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5188
    • 6 reactions found over 6 reactions in the full pathway
  • TRNA-CHARGING-PWY
    • 21 reactions found over 21 reactions in the full pathway
  • PWY-5921
    • 2 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ07890&oldid=134537"