Difference between revisions of "VALINE--TRNA-LIGASE-RXN"
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(Created page with "Category:reaction == Reaction RXN-7784 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.219 ec-1.1.1.219] == Reaction formula == * 1 C...") |
(Created page with "Category:reaction == Reaction VALINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** valine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction VALINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** valine-trna ligase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.9 ec-6.1.1.9] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[VAL-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** Category: [[ | + | * Gene: [[SJ20484]] |
− | *** Source: [[ | + | ** Category: [[annotation]] |
− | * Gene: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
+ | * Gene: [[SJ05104]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ04395]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02063]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ02072]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ16362]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ05105]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ15367]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[TRNA-CHARGING-PWY]], tRNA charging: |
− | ** ''' | + | ** '''21''' reactions found over '''21''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * METANETX-RXN : MNXR124096 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10705 10705] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P28350 P28350] | ||
+ | ** [http://www.uniprot.org/uniprot/P36420 P36420] | ||
+ | ** [http://www.uniprot.org/uniprot/P56000 P56000] | ||
+ | ** [http://www.uniprot.org/uniprot/O51680 O51680] | ||
+ | ** [http://www.uniprot.org/uniprot/O67411 O67411] | ||
+ | ** [http://www.uniprot.org/uniprot/O83998 O83998] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58413 Q58413] | ||
+ | ** [http://www.uniprot.org/uniprot/P43834 P43834] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4] | ||
+ | ** [http://www.uniprot.org/uniprot/O84304 O84304] | ||
+ | ** [http://www.uniprot.org/uniprot/P47576 P47576] | ||
+ | ** [http://www.uniprot.org/uniprot/Q94678 Q94678] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04462 Q04462] | ||
+ | ** [http://www.uniprot.org/uniprot/P26640 P26640] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05873 Q05873] | ||
+ | ** [http://www.uniprot.org/uniprot/Q26177 Q26177] | ||
+ | ** [http://www.uniprot.org/uniprot/P75304 P75304] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49021 Q49021] | ||
+ | ** [http://www.uniprot.org/uniprot/P11931 P11931] | ||
+ | ** [http://www.uniprot.org/uniprot/P07806 P07806] | ||
+ | ** [http://www.uniprot.org/uniprot/P07118 P07118] | ||
+ | ** [http://www.uniprot.org/uniprot/O77443 O77443] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=valine-trna ligase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.1.1.9}} |
+ | {{#set: nb gene associated=8}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction VALINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- valine-trna ligase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ20484
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05104
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04395
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02063
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ02072
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ16362
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05105
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ15367
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links