Difference between revisions of "SJ08551"
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(Created page with "Category:gene == Gene SJ11784 == * transcription-direction: ** negative * right-end-position: ** 151756 * left-end-position: ** 140173 * centisome-position: ** 38.182835...") |
(Created page with "Category:gene == Gene SJ04418 == * transcription-direction: ** negative * right-end-position: ** 96925 * left-end-position: ** 89463 * centisome-position: ** 83.344666...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ04418 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 96925 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 89463 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 83.344666 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[NAPHTHOATE-SYN-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[NPHS]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-13721]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-6384]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | == Pathway(s) associated == | ||
+ | * [[VALDEG-PWY]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5837]] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-3941]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7574]] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=96925}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=89463}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=83.344666 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
+ | {{#set: nb pathway associated=4}} |
Revision as of 14:21, 26 August 2019
Contents
Gene SJ04418
- transcription-direction:
- negative
- right-end-position:
- 96925
- left-end-position:
- 89463
- centisome-position:
- 83.344666
Organism(s) associated with this gene
Reaction(s) associated
- 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- NAPHTHOATE-SYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- NPHS
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-13721
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-6384
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-5837
- 4 reactions found over 7 reactions in the full pathway
- PWY-3941
- 2 reactions found over 6 reactions in the full pathway
- PWY-7574
- 3 reactions found over 5 reactions in the full pathway