Difference between revisions of "CPD-8625"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ12204 == * transcription-direction: ** negative * right-end-position: ** 37430 * left-end-position: ** 26433 * centisome-position: ** 3.4557548...")
 
(Created page with "Category:gene == Gene SJ00971 == * transcription-direction: ** positive * right-end-position: ** 103211 * left-end-position: ** 98279 * centisome-position: ** 61.839474...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12204 ==
+
== Gene SJ00971 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 37430
+
** 103211
 
* left-end-position:
 
* left-end-position:
−
** 26433
+
** 98279
 
* centisome-position:
 
* centisome-position:
−
** 3.4557548    
+
** 61.839474    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[TRANSALDOL-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[DIHYDLIPACETRANS-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PYRUVDEH-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12508]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12583]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-1132]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-1133]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-1134]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-1861]]
+
* [[PWY-7384]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
* [[P124-PWY]]
+
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''3''' reactions found over '''1''' reactions in the full pathway
−
* [[P185-PWY]]
+
* [[PWY-7218]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''7''' reactions found over '''4''' reactions in the full pathway
−
* [[NONOXIPENT-PWY]]
+
* [[PWY-5482]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5723]]
+
* [[PWY-5537]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-6886]]
−
{{#set: right-end-position=37430}}
+
** '''8''' reactions found over '''5''' reactions in the full pathway
−
{{#set: left-end-position=26433}}
+
* [[PYRUVDEHYD-PWY]]
−
{{#set: centisome-position=3.4557548   }}
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=103211}}
 +
{{#set: left-end-position=98279}}
 +
{{#set: centisome-position=61.839474   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=7}}

Revision as of 14:23, 26 August 2019

Gene SJ00971

  • transcription-direction:
    • positive
  • right-end-position:
    • 103211
  • left-end-position:
    • 98279
  • centisome-position:
    • 61.839474

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7384
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS-TCA-GLYOX-BYPASS
    • 3 reactions found over 1 reactions in the full pathway
  • PWY-7218
    • 7 reactions found over 4 reactions in the full pathway
  • PWY-5482
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5537
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PYRUVDEHYD-PWY
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-8625&oldid=19458"