Difference between revisions of "HEPARIN-GLUCOSAMINE-3-O-SULFATE"
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(Created page with "Category:gene == Gene SJ11330 == * transcription-direction: ** negative * right-end-position: ** 189871 * left-end-position: ** 182582 * centisome-position: ** 48.880272...") |
(Created page with "Category:gene == Gene SJ13007 == * transcription-direction: ** positive * right-end-position: ** 103789 * left-end-position: ** 98947 * centisome-position: ** 28.510466...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ13007 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 103789 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 98947 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 28.510466 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[2-OCTAPRENYL-6-OHPHENOL-METHY-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[2.1.1.114-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[2.1.1.64-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[DHHB-METHYLTRANSFER-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-11757]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-11758]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-12160]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9225]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9229]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9233]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9237]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9240]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9280]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9281]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9282]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-9287]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[RXN3O-102]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
Line 91: | Line 71: | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[PWY- | + | * [[PWY-6708]] |
− | ** '''5''' reactions found over ''' | + | ** '''5''' reactions found over '''8''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7233]] |
− | ** | + | ** '''3''' reactions found over '''10''' reactions in the full pathway |
− | + | * [[PWY-7235]] | |
− | + | ** '''3''' reactions found over '''n.a''' reactions in the full pathway | |
− | + | * [[PWY3O-19]] | |
− | + | ** '''4''' reactions found over '''8''' reactions in the full pathway | |
− | * [[PWY- | + | * [[PWY-5856]] |
− | + | ** '''3''' reactions found over '''8''' reactions in the full pathway | |
− | + | * [[PWY-5871]] | |
− | + | ** '''3''' reactions found over '''8''' reactions in the full pathway | |
− | + | * [[PWY-5870]] | |
− | ** '''3''' reactions found over ''' | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5855]] |
− | + | ** '''3''' reactions found over '''8''' reactions in the full pathway | |
− | + | * [[PWY-5873]] | |
− | ** '''4''' reactions found over ''' | + | ** '''3''' reactions found over '''8''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5857]] |
− | ** ''' | ||
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− | |||
− | * [[PWY- | ||
− | ** ''' | ||
− | * [[PWY- | ||
− | ** | ||
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− | * [[PWY- | ||
− | ** | ||
− | |||
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− | * [[PWY- | ||
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− | ** '''3''' reactions found over ''' | ||
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− | * [[PWY- | ||
** '''3''' reactions found over '''8''' reactions in the full pathway | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5872]] | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7230]] | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
</div> | </div> | ||
− | {{#set: transcription-direction= | + | {{#set: transcription-direction=positive}} |
− | {{#set: right-end-position= | + | {{#set: right-end-position=103789}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=98947}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=28.510466 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=17}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=12}} |
Revision as of 14:23, 26 August 2019
Contents
Gene SJ13007
- transcription-direction:
- positive
- right-end-position:
- 103789
- left-end-position:
- 98947
- centisome-position:
- 28.510466
Organism(s) associated with this gene
Reaction(s) associated
- 2-OCTAPRENYL-6-OHPHENOL-METHY-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- 2.1.1.114-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 2.1.1.64-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- DHHB-METHYLTRANSFER-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- RXN-11757
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-11758
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12160
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9225
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9229
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9233
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9237
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9240
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9280
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9281
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9282
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9287
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN3O-102
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6708
- 5 reactions found over 8 reactions in the full pathway
- PWY-7233
- 3 reactions found over 10 reactions in the full pathway
- PWY-7235
- 3 reactions found over n.a reactions in the full pathway
- PWY3O-19
- 4 reactions found over 8 reactions in the full pathway
- PWY-5856
- 3 reactions found over 8 reactions in the full pathway
- PWY-5871
- 3 reactions found over 8 reactions in the full pathway
- PWY-5870
- 4 reactions found over 9 reactions in the full pathway
- PWY-5855
- 3 reactions found over 8 reactions in the full pathway
- PWY-5873
- 3 reactions found over 8 reactions in the full pathway
- PWY-5857
- 3 reactions found over 8 reactions in the full pathway
- PWY-5872
- 3 reactions found over 9 reactions in the full pathway
- PWY-7230
- 3 reactions found over 9 reactions in the full pathway