Difference between revisions of "CPD-11520"
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(Created page with "Category:gene == Gene SJ05927 == * transcription-direction: ** negative * right-end-position: ** 22304 * left-end-position: ** 19121 * centisome-position: ** 22.149246...") |
(Created page with "Category:gene == Gene SJ12953 == * transcription-direction: ** positive * right-end-position: ** 25369 * left-end-position: ** 13172 * centisome-position: ** 3.7793882...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ12953 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 25369 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 13172 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 3.7793882 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[GLUTAMIDOTRANS-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[GLUTAMIN-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN | + | * [[PRIBFAICARPISOM-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| − | ** | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | * [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | ** Category: [[ | + | * [[PRICI]] |
| − | *** source: [[ | + | ** Category: [[orthology]] |
| − | * [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| + | * [[RXN-17900]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY | + | * [[HISTSYN-PWY]] |
| − | ** ''' | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
| − | * [[PWY | + | * [[CITRULBIO-PWY]] |
| − | ** ''' | + | ** '''7''' reactions found over '''8''' reactions in the full pathway |
| − | * [[ | + | * [[GLUTAMINDEG-PWY]] |
| − | + | ** '''1''' reactions found over '''1''' reactions in the full pathway | |
| − | + | {{#set: transcription-direction=positive}} | |
| − | ** ''' | + | {{#set: right-end-position=25369}} |
| − | {{#set: transcription-direction= | + | {{#set: left-end-position=13172}} |
| − | {{#set: right-end-position= | + | {{#set: centisome-position=3.7793882 }} |
| − | {{#set: left-end-position= | ||
| − | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
Revision as of 14:23, 26 August 2019
Contents
Gene SJ12953
- transcription-direction:
- positive
- right-end-position:
- 25369
- left-end-position:
- 13172
- centisome-position:
- 3.7793882
Organism(s) associated with this gene
Reaction(s) associated
- GLUTAMIDOTRANS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLUTAMIN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PRIBFAICARPISOM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PRICI
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-17900
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- HISTSYN-PWY
- 10 reactions found over 10 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
- GLUTAMINDEG-PWY
- 1 reactions found over 1 reactions in the full pathway
