Difference between revisions of "An-iNisup1sup-ethyladenine-in-DNA"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] == * direction: ** left-to-right * common-name: ** xyloglucan xxlg oligosaccha...")
 
(Created page with "Category:gene == Gene SJ08968 == * transcription-direction: ** negative * right-end-position: ** 9921 * left-end-position: ** 5919 * centisome-position: ** 0.7205779 =...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] ==
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== Gene SJ08968 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** xyloglucan xxlg oligosaccharide β-galactosidase
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** 9921
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** beta-galactosidase
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* left-end-position:
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** xxlg xyloglucan oligosaccharide β-galactosidase
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** 5919
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* ec-number:
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* centisome-position:
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** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
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** 0.7205779   
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[CPD-13376]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
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* [[S.japonica_carotenoid_curated]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[SJ04558]]
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* [[3.1.26.3-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ14193]]
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* [[ATPASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ03139]]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-12195]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10277]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-12196]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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== Pathway(s) ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
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* [[RXN0-5462]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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** Category: [[annotation]]
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== Reconstruction information  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PWY-7210]]
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== External links  ==
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: direction=left-to-right}}
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* [[PWY-7198]]
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{{#set: common-name=beta-galactosidase|xxlg xyloglucan oligosaccharide β-galactosidase|xyloglucan xxlg oligosaccharide β-galactosidase}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
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{{#set: ec-number=ec-3.2.1.23}}
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* [[PWY-7184]]
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{{#set: nb gene associated=4}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb pathway associated=1}}
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* [[PWY-6545]]
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{{#set: reconstruction category=orthology|annotation}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: transcription-direction=negative}}
−
{{#set: reconstruction comment=n.a}}
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{{#set: right-end-position=9921}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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{{#set: left-end-position=5919}}
 +
{{#set: centisome-position=0.7205779    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=6}}
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{{#set: nb pathway associated=4}}

Revision as of 14:24, 26 August 2019

Gene SJ08968

  • transcription-direction:
    • negative
  • right-end-position:
    • 9921
  • left-end-position:
    • 5919
  • centisome-position:
    • 0.7205779

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




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