Difference between revisions of "GLC-6-P"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSMANMUT-RXN PHOSMANMUT-RXN] == * direction: ** reversible * common-name: ** phosphomannomutase *...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** reversible * common-name: ** aspartate tran...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSMANMUT-RXN PHOSMANMUT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** phosphomannomutase
+
** aspartate transaminase
 +
** l-phenylalanine:2-oxoglutarate aminotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.2.8 ec-5.4.2.8]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MANNOSE-1P]][c] '''<=>''' 1 [[CPD-15979]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02279]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ04188]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08678]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05778]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14545]]
+
* Gene: [[SJ07646]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20943]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5659]], GDP-mannose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5659 PWY-5659]
+
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7456]], &beta;-(1,4)-mannan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7456 PWY-7456]
+
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7586]], &beta;-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7586 PWY-7586]
+
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11143 11143]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21827 21827]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01818 R01818]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P26276 P26276]
+
** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
−
** [http://www.uniprot.org/uniprot/P29955 P29955]
+
** [http://www.uniprot.org/uniprot/P08906 P08906]
−
** [http://www.uniprot.org/uniprot/P24175 P24175]
+
** [http://www.uniprot.org/uniprot/P12343 P12343]
−
** [http://www.uniprot.org/uniprot/P07283 P07283]
+
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
−
** [http://www.uniprot.org/uniprot/P47723 P47723]
+
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
−
** [http://www.uniprot.org/uniprot/Q57842 Q57842]
+
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
−
** [http://www.uniprot.org/uniprot/P47299 P47299]
+
** [http://www.uniprot.org/uniprot/O28151 O28151]
−
** [http://www.uniprot.org/uniprot/Q59428 Q59428]
+
** [http://www.uniprot.org/uniprot/O67781 O67781]
−
** [http://www.uniprot.org/uniprot/Q06951 Q06951]
+
** [http://www.uniprot.org/uniprot/P08907 P08907]
−
** [http://www.uniprot.org/uniprot/Q49913 Q49913]
+
** [http://www.uniprot.org/uniprot/P12345 P12345]
−
** [http://www.uniprot.org/uniprot/P75050 P75050]
+
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
−
** [http://www.uniprot.org/uniprot/Q51847 Q51847]
+
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
 +
** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
 +
** [http://www.uniprot.org/uniprot/P53001 P53001]
 +
** [http://www.uniprot.org/uniprot/P96847 P96847]
 +
** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
 +
** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
 +
** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
 +
** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
 +
** [http://www.uniprot.org/uniprot/O66737 O66737]
 +
** [http://www.uniprot.org/uniprot/O28650 O28650]
 +
** [http://www.uniprot.org/uniprot/O30304 O30304]
 +
** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
 +
** [http://www.uniprot.org/uniprot/O27916 O27916]
 +
** [http://www.uniprot.org/uniprot/O05237 O05237]
 +
** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
 +
** [http://www.uniprot.org/uniprot/O25383 O25383]
 +
** [http://www.uniprot.org/uniprot/O27638 O27638]
 +
** [http://www.uniprot.org/uniprot/O96142 O96142]
 +
** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
 +
** [http://www.uniprot.org/uniprot/P00507 P00507]
 +
** [http://www.uniprot.org/uniprot/P44425 P44425]
 +
** [http://www.uniprot.org/uniprot/Q59569 Q59569]
 +
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
 +
** [http://www.uniprot.org/uniprot/P37833 P37833]
 +
** [http://www.uniprot.org/uniprot/O48599 O48599]
 +
** [http://www.uniprot.org/uniprot/O33822 O33822]
 +
** [http://www.uniprot.org/uniprot/P05201 P05201]
 +
** [http://www.uniprot.org/uniprot/P05202 P05202]
 +
** [http://www.uniprot.org/uniprot/P14909 P14909]
 +
** [http://www.uniprot.org/uniprot/P17174 P17174]
 +
** [http://www.uniprot.org/uniprot/P33097 P33097]
 +
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
 +
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
 +
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
 +
** [http://www.uniprot.org/uniprot/P12344 P12344]
 +
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
 +
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
 +
** [http://www.uniprot.org/uniprot/P36692 P36692]
 +
** [http://www.uniprot.org/uniprot/P28011 P28011]
 +
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
 +
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
 +
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
 +
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
 +
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
 +
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
 +
** [http://www.uniprot.org/uniprot/P72859 P72859]
 +
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
 +
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
 +
** [http://www.uniprot.org/uniprot/O48598 O48598]
 +
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
 +
** [http://www.uniprot.org/uniprot/P46248 P46248]
 +
** [http://www.uniprot.org/uniprot/O48548 O48548]
 +
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
 +
** [http://www.uniprot.org/uniprot/P28734 P28734]
 +
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
 +
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
 +
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
 +
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
 +
** [http://www.uniprot.org/uniprot/O01804 O01804]
 +
** [http://www.uniprot.org/uniprot/O54170 O54170]
 +
** [http://www.uniprot.org/uniprot/O42652 O42652]
 +
** [http://www.uniprot.org/uniprot/O94320 O94320]
 +
** [http://www.uniprot.org/uniprot/P46644 P46644]
 +
** [http://www.uniprot.org/uniprot/P00504 P00504]
 +
** [http://www.uniprot.org/uniprot/P00508 P00508]
 +
** [http://www.uniprot.org/uniprot/P00509 P00509]
 +
** [http://www.uniprot.org/uniprot/P00505 P00505]
 +
** [http://www.uniprot.org/uniprot/P00503 P00503]
 +
** [http://www.uniprot.org/uniprot/P00506 P00506]
 +
** [http://www.uniprot.org/uniprot/P26563 P26563]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=phosphomannomutase}}
+
{{#set: common-name=l-phenylalanine:2-oxoglutarate aminotransferase|aspartate transaminase}}
−
{{#set: ec-number=ec-5.4.2.8}}
+
{{#set: ec-number=ec-2.6.1.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=9}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction ASPAMINOTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • aspartate transaminase
    • l-phenylalanine:2-oxoglutarate aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GLC-6-P&oldid=21579"