Difference between revisions of "Holo-EntB"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18092 RXN-18092] == * direction: ** left-to-right * common-name: ** γ-glutamyltranspeptid...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGINASE-RXN ARGINASE-RXN] == * direction: ** reversible * common-name: ** arginase * ec-number: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18092 RXN-18092] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGINASE-RXN ARGINASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** γ-glutamyltranspeptidase
+
** arginase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.2.2 ec-2.3.2.2]
+
** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLUTATHIONE]][c] '''+''' 1 [[GLYCYLGLYCINE]][c] '''=>''' 1 [[CPD-19395]][c] '''+''' 1 [[CYS-GLY]][c]
+
* 1 [[ARG]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-ORNITHINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08599]]
+
* Gene: [[SJ12906]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08598]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00773]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=&gamma;-glutamyltranspeptidase}}
+
* RHEA:
−
{{#set: ec-number=ec-2.3.2.2}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20572 20572]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00551 R00551]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P05089 P05089]
 +
** [http://www.uniprot.org/uniprot/P07824 P07824]
 +
** [http://www.uniprot.org/uniprot/P40906 P40906]
 +
** [http://www.uniprot.org/uniprot/Q7M0Z3 Q7M0Z3]
 +
** [http://www.uniprot.org/uniprot/P14012 P14012]
 +
** [http://www.uniprot.org/uniprot/P37818 P37818]
 +
** [http://www.uniprot.org/uniprot/P49900 P49900]
 +
** [http://www.uniprot.org/uniprot/P39138 P39138]
 +
** [http://www.uniprot.org/uniprot/P53608 P53608]
 +
** [http://www.uniprot.org/uniprot/P72703 P72703]
 +
** [http://www.uniprot.org/uniprot/O68051 O68051]
 +
** [http://www.uniprot.org/uniprot/O49046 O49046]
 +
** [http://www.uniprot.org/uniprot/O76895 O76895]
 +
** [http://www.uniprot.org/uniprot/P33280 P33280]
 +
** [http://www.uniprot.org/uniprot/Q10066 Q10066]
 +
** [http://www.uniprot.org/uniprot/P00812 P00812]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=arginase}}
 +
{{#set: ec-number=ec-3.5.3.1}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction ARGINASE-RXN

  • direction:
    • reversible
  • common-name:
    • arginase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6922, L-Nδ-acetylornithine biosynthesis: PWY-6922
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARG-GLU-PWY, L-arginine degradation VII (arginase 3 pathway): ARG-GLU-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 4 reactions found over 4 reactions in the full pathway
  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway): ARG-PRO-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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