Difference between revisions of "CPD-3713"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] == * direction: ** reversible * common-name: ** aspartate transc...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10038 RXN-10038] == * direction: ** reversible * common-name: ** o-phosphoseryl-trna[ser]sec ki...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10038 RXN-10038] ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** aspartate transcarbamylase
+
** o-phosphoseryl-trna[ser]sec kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.3.2 ec-2.1.3.2]
+
** [http://enzyme.expasy.org/EC/2.7.1.164 ec-2.7.1.164]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[O-phospho-L-seryl-tRNASecs]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18541]]
+
* Gene: [[SJ19400]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17851]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15949]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
+
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20016 20016]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25040 25040]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01397 R01397]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08223 R08223]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08955 P08955]
 
−
** [http://www.uniprot.org/uniprot/P27708 P27708]
 
−
** [http://www.uniprot.org/uniprot/Q04595 Q04595]
 
−
** [http://www.uniprot.org/uniprot/Q59711 Q59711]
 
−
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 
−
** [http://www.uniprot.org/uniprot/P65616 P65616]
 
−
** [http://www.uniprot.org/uniprot/Q59712 Q59712]
 
−
** [http://www.uniprot.org/uniprot/Q9CF79 Q9CF79]
 
−
** [http://www.uniprot.org/uniprot/Q58976 Q58976]
 
−
** [http://www.uniprot.org/uniprot/P08421 P08421]
 
−
** [http://www.uniprot.org/uniprot/P0A786 P0A786]
 
−
** [http://www.uniprot.org/uniprot/P0A7F3 P0A7F3]
 
−
** [http://www.uniprot.org/uniprot/P19936 P19936]
 
−
** [http://www.uniprot.org/uniprot/Q58801 Q58801]
 
−
** [http://www.uniprot.org/uniprot/Q9PNJ6 Q9PNJ6]
 
−
** [http://www.uniprot.org/uniprot/P05654 P05654]
 
−
** [http://www.uniprot.org/uniprot/P0A1Z4 P0A1Z4]
 
−
** [http://www.uniprot.org/uniprot/P19910 P19910]
 
−
** [http://www.uniprot.org/uniprot/P07259 P07259]
 
−
** [http://www.uniprot.org/uniprot/P20054 P20054]
 
−
** [http://www.uniprot.org/uniprot/P05990 P05990]
 
−
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 
−
** [http://www.uniprot.org/uniprot/Q09027 Q09027]
 
−
** [http://www.uniprot.org/uniprot/P49077 P49077]
 
−
** [http://www.uniprot.org/uniprot/Q9S983 Q9S983]
 
−
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 
−
** [http://www.uniprot.org/uniprot/P74163 P74163]
 
−
** [http://www.uniprot.org/uniprot/Q43064 Q43064]
 
−
** [http://www.uniprot.org/uniprot/Q43086 Q43086]
 
−
** [http://www.uniprot.org/uniprot/Q43087 Q43087]
 
−
** [http://www.uniprot.org/uniprot/Q84493 Q84493]
 
−
** [http://www.uniprot.org/uniprot/Q9UAH8 Q9UAH8]
 
−
** [http://www.uniprot.org/uniprot/Q60252 Q60252]
 
−
** [http://www.uniprot.org/uniprot/P96174 P96174]
 
−
** [http://www.uniprot.org/uniprot/P96175 P96175]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=aspartate transcarbamylase}}
+
{{#set: common-name=o-phosphoseryl-trna[ser]sec kinase}}
−
{{#set: ec-number=ec-2.1.3.2}}
+
{{#set: ec-number=ec-2.7.1.164}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:24, 26 August 2019

Reaction RXN-10038

  • direction:
    • reversible
  • common-name:
    • o-phosphoseryl-trna[ser]sec kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "o-phosphoseryl-trna[ser]sec kinase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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