Difference between revisions of "3-OXO-EICOSAPENTAENOYL-ACP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] == * direction: ** left-to-right * common-name: ** phosphoribosy...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == * direction: ** reversible * common-nam...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phosphoribosyl-amp cyclohydrolase
+
** nad-dependent glutamate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.19 ec-3.5.4.19]
+
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07444]]
+
* Gene: [[SJ00250]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20174]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10621]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
+
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20050 20050]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04037 R04037]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44434 P44434]
+
** [http://www.uniprot.org/uniprot/P20016 P20016]
−
** [http://www.uniprot.org/uniprot/Q9JVH6 Q9JVH6]
+
** [http://www.uniprot.org/uniprot/P28997 P28997]
−
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
+
** [http://www.uniprot.org/uniprot/P41755 P41755]
−
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
+
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
−
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
+
** [http://www.uniprot.org/uniprot/P00365 P00365]
−
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
+
** [http://www.uniprot.org/uniprot/P93541 P93541]
−
** [http://www.uniprot.org/uniprot/Q58825 Q58825]
+
** [http://www.uniprot.org/uniprot/P80319 P80319]
−
** [http://www.uniprot.org/uniprot/O28329 O28329]
+
** [http://www.uniprot.org/uniprot/P24295 P24295]
−
** [http://www.uniprot.org/uniprot/O34912 O34912]
+
** [http://www.uniprot.org/uniprot/P27346 P27346]
−
** [http://www.uniprot.org/uniprot/P0A5B3 P0A5B3]
+
** [http://www.uniprot.org/uniprot/P33327 P33327]
−
** [http://www.uniprot.org/uniprot/Q9HUB7 Q9HUB7]
+
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
−
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
+
** [http://www.uniprot.org/uniprot/O04937 O04937]
−
** [http://www.uniprot.org/uniprot/Q9K0H5 Q9K0H5]
+
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
−
** [http://www.uniprot.org/uniprot/O67780 O67780]
+
** [http://www.uniprot.org/uniprot/O74024 O74024]
−
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
+
** [http://www.uniprot.org/uniprot/O59650 O59650]
−
** [http://www.uniprot.org/uniprot/Q50837 Q50837]
 
−
** [http://www.uniprot.org/uniprot/Q53158 Q53158]
 
−
** [http://www.uniprot.org/uniprot/P45353 P45353]
 
−
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
 
−
** [http://www.uniprot.org/uniprot/P00815 P00815]
 
−
** [http://www.uniprot.org/uniprot/P07685 P07685]
 
−
** [http://www.uniprot.org/uniprot/O59667 O59667]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C3 Q9X7C3]
 
−
** [http://www.uniprot.org/uniprot/O82768 O82768]
 
−
** [http://www.uniprot.org/uniprot/P10367 P10367]
 
−
** [http://www.uniprot.org/uniprot/P06989 P06989]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=phosphoribosyl-amp cyclohydrolase}}
+
{{#set: common-name=nad-dependent glutamate dehydrogenase}}
−
{{#set: ec-number=ec-3.5.4.19}}
+
{{#set: ec-number=ec-1.4.1.2}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 14:24, 26 August 2019

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • nad-dependent glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I: GLUTAMATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate): ALACAT2-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered): PWY-7126
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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