Difference between revisions of "Single-Stranded-DNAs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** left-to-right * common-name: ** coproporphyrinogen oxidase...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.170-RXN 1.1.1.170-RXN] == * direction: ** reversible * common-name: ** 3β-hydroxy-4&beta...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.170-RXN 1.1.1.170-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** coproporphyrinogen oxidase
+
** 3β-hydroxy-4β-methyl-5α-cholest-7-ene-4α-carboxylate 3-dehydrogenase, decarboxylating
−
** coproporphyrinogen iii oxidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.3 ec-1.3.3.3]
+
** [http://enzyme.expasy.org/EC/1.1.1.170 ec-1.1.1.170]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CPD-5846]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''<=>''' 1 [[4-ALPHA-METHYL-5-ALPHA-CHOLEST-7-EN-3-ON]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11059]]
+
* Gene: [[SJ04782]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05457]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15840]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18258 18258]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20676 20676]
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20672 20672]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07149 R07149]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
+
{{#set: common-name=3&beta;-hydroxy-4&beta;-methyl-5&alpha;-cholest-7-ene-4&alpha;-carboxylate 3-dehydrogenase, decarboxylating}}
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
+
{{#set: ec-number=ec-1.1.1.170}}
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
 
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
 
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
 
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
 
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
 
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
 
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
 
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
 
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
 
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
 
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
 
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
 
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
 
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
 
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
 
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
 
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=coproporphyrinogen iii oxidase|coproporphyrinogen oxidase}}
 
−
{{#set: ec-number=ec-1.3.3.3}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction 1.1.1.170-RXN

  • direction:
    • reversible
  • common-name:
    • 3β-hydroxy-4β-methyl-5α-cholest-7-ene-4α-carboxylate 3-dehydrogenase, decarboxylating
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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