Difference between revisions of "RXN-13725"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9282 RXN-9282] == * direction: ** left-to-right * common-name: ** decaprenyldihydroxybenzoate m...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.19-RXN 2.5.1.19-RXN] == * direction: ** reversible * common-name: ** 3-phosphoshikimate-1-car...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.19-RXN 2.5.1.19-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** 3-phosphoshikimate-1-carboxyvinyltransferase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19] |
− | |||
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[SHIKIMATE-5P]][c] '''<=>''' 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ10493]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ06122]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] |
− | ** ''' | + | ** '''6''' reactions found over '''5''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21259 21259] |
− | {{#set: direction= | + | * LIGAND-RXN: |
− | {{#set: common-name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03460 R03460] |
− | {{#set: ec-number=ec-2. | + | * UNIPROT: |
− | + | ** [http://www.uniprot.org/uniprot/P22299 P22299] | |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P07547 P07547] |
+ | ** [http://www.uniprot.org/uniprot/P08566 P08566] | ||
+ | ** [http://www.uniprot.org/uniprot/P22487 P22487] | ||
+ | ** [http://www.uniprot.org/uniprot/P52312 P52312] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTT3 Q9JTT3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q03421 Q03421] | ||
+ | ** [http://www.uniprot.org/uniprot/P19786 P19786] | ||
+ | ** [http://www.uniprot.org/uniprot/P17688 P17688] | ||
+ | ** [http://www.uniprot.org/uniprot/P24497 P24497] | ||
+ | ** [http://www.uniprot.org/uniprot/P23981 P23981] | ||
+ | ** [http://www.uniprot.org/uniprot/P23281 P23281] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04570 Q04570] | ||
+ | ** [http://www.uniprot.org/uniprot/P43905 P43905] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59975 Q59975] | ||
+ | ** [http://www.uniprot.org/uniprot/P12421 P12421] | ||
+ | ** [http://www.uniprot.org/uniprot/P07637 P07637] | ||
+ | ** [http://www.uniprot.org/uniprot/P19688 P19688] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6D3 P0A6D3] | ||
+ | ** [http://www.uniprot.org/uniprot/P11043 P11043] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=3-phosphoshikimate-1-carboxyvinyltransferase}} | ||
+ | {{#set: ec-number=ec-2.5.1.19}} | ||
+ | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:26, 26 August 2019
Contents
Reaction 2.5.1.19-RXN
- direction:
- reversible
- common-name:
- 3-phosphoshikimate-1-carboxyvinyltransferase
- ec-number:
Reaction formula
- 1 PHOSPHO-ENOL-PYRUVATE[c] + 1 SHIKIMATE-5P[c] <=> 1 3-ENOLPYRUVYL-SHIKIMATE-5P[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ10493
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ06122
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
- 6 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links