Difference between revisions of "DCTCP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATID ATID] == * direction: ** left-to-right * common-name: ** atp:idp phosphotransferase == Reactio...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** left-to-right * common-name: ** prephytoene diphospha...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATID ATID] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** atp:idp phosphotransferase
+
** prephytoene diphosphate synthase
 +
* synonymous:
 +
** psase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ATP]][c] '''+''' 1.0 [[IDP]][c] '''=>''' 1.0 [[ADP]][c] '''+''' 1.0 [[ITP]][c]
+
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10125]]
+
* Gene: [[SJ02885]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7943]], lycopadiene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7943 PWY-7943]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P53609 P53609]
 +
** [http://www.uniprot.org/uniprot/P37295 P37295]
 +
** [http://www.uniprot.org/uniprot/P22872 P22872]
 +
** [http://www.uniprot.org/uniprot/P53610 P53610]
 +
** [http://www.uniprot.org/uniprot/P53612 P53612]
 +
** [http://www.uniprot.org/uniprot/P17056 P17056]
 +
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=atp:idp phosphotransferase}}
+
{{#set: common-name=prephytoene diphosphate synthase}}
 +
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction 2.5.1.32-RXN

  • direction:
    • left-to-right
  • common-name:
    • prephytoene diphosphate synthase
  • synonymous:
    • psase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7943, lycopadiene biosynthesis: PWY-7943
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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