Difference between revisions of "RXN-16063"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.94-RXN 2.4.1.94-RXN] == * direction: ** reversible * common-name: ** protein n-acetylglucosam...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** left-to-right * common-name: ** phytoene synthase * syn...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** phytoene synthase |
| − | * | + | * synonymous: |
| − | ** | + | ** prephytoene-diphosphate synthase |
| + | ** psase | ||
| + | ** geranylgeranyl-diphosphate geranylgeranyltransferase | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | + | * Gene: [[SJ02885]] | |
| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | + | ** Category: [[orthology]] | |
| − | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
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| − | ** Category: [[ | ||
| − | *** Source: [[ | ||
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== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-5942]], trans-lycopene biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] | ||
| + | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287] | ||
| + | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270] |
| − | {{#set: direction= | + | {{#set: direction=left-to-right}} |
| − | {{#set: common-name= | + | {{#set: common-name=phytoene synthase}} |
| − | {{#set: | + | {{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|prephytoene-diphosphate synthase|psase}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:26, 26 August 2019
Contents
Reaction RXNARA-8002
- direction:
- left-to-right
- common-name:
- phytoene synthase
- synonymous:
- prephytoene-diphosphate synthase
- psase
- geranylgeranyl-diphosphate geranylgeranyltransferase
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ02885
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5942, trans-lycopene biosynthesis I: PWY-5942
- 2 reactions found over 2 reactions in the full pathway
- PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): PWY-6475
- 8 reactions found over 8 reactions in the full pathway
- PWY-6287, neurosporene biosynthesis: PWY-6287
- 2 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
