Difference between revisions of "TCV3"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] == * direction: ** left-to-right * ec-number: ** [http...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-GLUT-RXN GMP-SYN-GLUT-RXN] == * direction: ** left-to-right * common-name: ** xanthosine-5'...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-GLUT-RXN GMP-SYN-GLUT-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** xanthosine-5'-phosphate:l-glutamine amido-ligase (amp-forming) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.3.5.2 ec-6.3.5.2] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[GMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ08788]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | *** Source: [[ | + | * Gene: [[SJ22386]] |
− | + | ** Category: [[annotation]] | |
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221] |
− | ** '''4''' reactions found over ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | |||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11681 11681] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01231 R01231] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P32073 P32073] |
+ | ** [http://www.uniprot.org/uniprot/P49915 P49915] | ||
+ | ** [http://www.uniprot.org/uniprot/O25165 O25165] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58531 Q58531] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN49 Q9PN49] | ||
+ | ** [http://www.uniprot.org/uniprot/P29727 P29727] | ||
+ | ** [http://www.uniprot.org/uniprot/O66601 O66601] | ||
+ | ** [http://www.uniprot.org/uniprot/P49056 P49056] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CFJ0 Q9CFJ0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JW60 Q9JW60] | ||
+ | ** [http://www.uniprot.org/uniprot/P44335 P44335] | ||
+ | ** [http://www.uniprot.org/uniprot/P38625 P38625] | ||
+ | ** [http://www.uniprot.org/uniprot/P49057 P49057] | ||
+ | ** [http://www.uniprot.org/uniprot/P04079 P04079] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7VLE9 Q7VLE9] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=xanthosine-5'-phosphate:l-glutamine amido-ligase (amp-forming)}} |
+ | {{#set: ec-number=ec-6.3.5.2}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 14:28, 26 August 2019
Contents
Reaction GMP-SYN-GLUT-RXN
- direction:
- left-to-right
- common-name:
- xanthosine-5'-phosphate:l-glutamine amido-ligase (amp-forming)
- ec-number:
Reaction formula
- 1 ATP[c] + 1 GLN[c] + 1 WATER[c] + 1 XANTHOSINE-5-PHOSPHATE[c] => 1 AMP[c] + 1 GLT[c] + 1 GMP[c] + 1 PPI[c] + 2 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ08788
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ22386
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links