Difference between revisions of "SJ18124"
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(Created page with "Category:gene == Gene SJ22622 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * ATPASE-RXN ** Category...") |
(Created page with "Category:gene == Gene SJ17348 == * transcription-direction: ** positive * right-end-position: ** 41766 * left-end-position: ** 28599 * centisome-position: ** 10.866625...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ17348 == |
+ | * transcription-direction: | ||
+ | ** positive | ||
+ | * right-end-position: | ||
+ | ** 41766 | ||
+ | * left-end-position: | ||
+ | ** 28599 | ||
+ | * centisome-position: | ||
+ | ** 10.866625 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[HBCO_LPAREN_nadp_RPAREN_]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[HBCO_LPAREN_nadp_RPAREN_m]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[OHACYL-COA-DEHYDROG-RXN]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** source: [[ | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
− | * [[RXN0- | + | * [[RXN-10698]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** source: [[ | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
+ | * [[RXN-10702]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-10703]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-11245]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-11662]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12490]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12570]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12705]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12750]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-16133]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17777]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17781]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17786]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17790]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17793]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17794]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17797]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-17798]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-905]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN0-2044]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** ''' | + | * [[PWY-5136]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
+ | * [[FAO-PWY]] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY66-391]] | ||
** '''6''' reactions found over '''7''' reactions in the full pathway | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-7007]] |
− | ** '''9''' reactions found over ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-735]] |
− | ** '''8''' reactions found over '''9''' reactions in the full pathway | + | ** '''16''' reactions found over '''19''' reactions in the full pathway |
+ | * [[PWY-6435]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5177]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7778]] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6863]] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[CENTFERM-PWY]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6583]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6883]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5789]] | ||
+ | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[P162-PWY]] | ||
+ | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7216]] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7401]] | ||
+ | ** '''6''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-7779]] | ||
+ | ** '''2''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7094]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6945]] | ||
+ | ** '''5''' reactions found over '''17''' reactions in the full pathway | ||
+ | * [[PWY-6946]] | ||
+ | ** '''6''' reactions found over '''22''' reactions in the full pathway | ||
+ | * [[PWY-6944]] | ||
+ | ** '''2''' reactions found over '''25''' reactions in the full pathway | ||
+ | * [[PWY-81]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY0-321]] | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-1361]] | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=41766}} | ||
+ | {{#set: left-end-position=28599}} | ||
+ | {{#set: centisome-position=10.866625 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=24}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=24}} |
Revision as of 09:26, 27 August 2019
Contents
Gene SJ17348
- transcription-direction:
- positive
- right-end-position:
- 41766
- left-end-position:
- 28599
- centisome-position:
- 10.866625
Organism(s) associated with this gene
Reaction(s) associated
- 3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- HBCO_LPAREN_nadp_RPAREN_
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- HBCO_LPAREN_nadp_RPAREN_m
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- OHACYL-COA-DEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10698
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10702
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10703
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-11245
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-11662
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12490
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12570
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12705
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12750
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16133
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17777
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17781
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17786
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17790
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17793
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17794
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17797
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17798
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-905
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-2044
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5136
- 5 reactions found over 5 reactions in the full pathway
- FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY66-391
- 6 reactions found over 7 reactions in the full pathway
- PWY-7007
- 4 reactions found over 6 reactions in the full pathway
- PWY-735
- 16 reactions found over 19 reactions in the full pathway
- PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY-5177
- 5 reactions found over 5 reactions in the full pathway
- PWY-7778
- 3 reactions found over 8 reactions in the full pathway
- PWY-6863
- 9 reactions found over 11 reactions in the full pathway
- CENTFERM-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY-6583
- 6 reactions found over 8 reactions in the full pathway
- PWY-6883
- 5 reactions found over 6 reactions in the full pathway
- PWY-5789
- 8 reactions found over 18 reactions in the full pathway
- P162-PWY
- 7 reactions found over 11 reactions in the full pathway
- PWY-7216
- 3 reactions found over 5 reactions in the full pathway
- PWY-7401
- 6 reactions found over 15 reactions in the full pathway
- PWY-7779
- 2 reactions found over 10 reactions in the full pathway
- PWY-7094
- 5 reactions found over 6 reactions in the full pathway
- PWY-6945
- 5 reactions found over 17 reactions in the full pathway
- PWY-6946
- 6 reactions found over 22 reactions in the full pathway
- PWY-6944
- 2 reactions found over 25 reactions in the full pathway
- PWY-81
- 2 reactions found over 6 reactions in the full pathway
- PWY0-321
- 2 reactions found over 9 reactions in the full pathway
- PWY-1361
- 2 reactions found over 7 reactions in the full pathway