Difference between revisions of "56-Dihydrouracil16-in-tRNAs"
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(Created page with "Category:gene == Gene SJ20690 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * RXN-1884 ** Category:...") |
(Created page with "Category:gene == Gene SJ00231 == * transcription-direction: ** negative * right-end-position: ** 103812 * left-end-position: ** 89822 * centisome-position: ** 15.766377...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ00231 == |
+ | * transcription-direction: | ||
+ | ** negative | ||
+ | * right-end-position: | ||
+ | ** 103812 | ||
+ | * left-end-position: | ||
+ | ** 89822 | ||
+ | * centisome-position: | ||
+ | ** 15.766377 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[RXN | + | * [[DTDPGLUCDEHYDRAT-RXN]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[UDP-GLUCURONATE-DECARBOXYLASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[UGDC]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''6''' reactions found over '''8''' reactions in the full pathway | + | * [[PWY-6808]] |
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7657]] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7104]] | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6973]] | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6974]] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6976]] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6953]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7414]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7315]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7318]] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6942]] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7440]] | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7814]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-3221]] | ||
+ | ** '''1''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[PWY-7413]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7312]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7316]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[DTDPRHAMSYN-PWY]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7688]] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7301]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-4821]] | ||
+ | ** '''2''' reactions found over '''1''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=103812}} | ||
+ | {{#set: left-end-position=89822}} | ||
+ | {{#set: centisome-position=15.766377 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=21}} |
Revision as of 09:27, 27 August 2019
Contents
Gene SJ00231
- transcription-direction:
- negative
- right-end-position:
- 103812
- left-end-position:
- 89822
- centisome-position:
- 15.766377
Organism(s) associated with this gene
Reaction(s) associated
- DTDPGLUCDEHYDRAT-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- UDP-GLUCURONATE-DECARBOXYLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- UGDC
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-6808
- 1 reactions found over 9 reactions in the full pathway
- PWY-7657
- 1 reactions found over 7 reactions in the full pathway
- PWY-7104
- 1 reactions found over 8 reactions in the full pathway
- PWY-6973
- 1 reactions found over 9 reactions in the full pathway
- PWY-6974
- 1 reactions found over 7 reactions in the full pathway
- PWY-6976
- 1 reactions found over 7 reactions in the full pathway
- PWY-6953
- 1 reactions found over 5 reactions in the full pathway
- PWY-7414
- 1 reactions found over 5 reactions in the full pathway
- PWY-7315
- 1 reactions found over 4 reactions in the full pathway
- PWY-7318
- 1 reactions found over 5 reactions in the full pathway
- PWY-6942
- 1 reactions found over 6 reactions in the full pathway
- PWY-7440
- 1 reactions found over 8 reactions in the full pathway
- PWY-7814
- 2 reactions found over 6 reactions in the full pathway
- PWY-3221
- 1 reactions found over n.a reactions in the full pathway
- PWY-7413
- 1 reactions found over 4 reactions in the full pathway
- PWY-7312
- 1 reactions found over 4 reactions in the full pathway
- PWY-7316
- 1 reactions found over 4 reactions in the full pathway
- DTDPRHAMSYN-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-7688
- 1 reactions found over 6 reactions in the full pathway
- PWY-7301
- 2 reactions found over 5 reactions in the full pathway
- PWY-4821
- 2 reactions found over 1 reactions in the full pathway