Difference between revisions of "CPD-845"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ04229 == * transcription-direction: ** positive * right-end-position: ** 194660 * left-end-position: ** 187785 * centisome-position: ** 36.380455...") |
(Created page with "Category:gene == Gene SJ06882 == * transcription-direction: ** positive * right-end-position: ** 362793 * left-end-position: ** 349863 * centisome-position: ** 74.659256...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ06882 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 362793 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 349863 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 74.659256 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-11750]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-12969]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-13001]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-13302]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-13303]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-13304]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-13305]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-13444]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-14485]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-14494]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-16021]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-16096]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-16113]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | * [[RXN-16130]] | |
− | |||
− | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | * [[RXN-16155]] | |
− | |||
− | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-17110]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
Line 109: | Line 67: | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[PWY-5080]] |
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7592]] | ||
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5353]] |
− | ** ''' | + | ** '''7''' reactions found over '''8''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7724]] |
− | + | ** '''4''' reactions found over '''7''' reactions in the full pathway | |
− | + | * [[PWY-7619]] | |
− | ** | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
− | + | * [[PWY-7602]] | |
− | + | ** '''4''' reactions found over '''7''' reactions in the full pathway | |
− | + | * [[PWY-7036]] | |
− | + | ** '''14''' reactions found over '''16''' reactions in the full pathway | |
− | * [[PWY- | + | * [[PWY-7053]] |
− | ** ''' | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7606]] |
− | ** ''' | + | ** '''8''' reactions found over '''14''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7727]] |
− | ** | ||
− | |||
− | |||
− | * [[PWY- | ||
− | ** ''' | ||
− | |||
− | |||
− | * [[PWY- | ||
− | ** ''' | ||
− | * [[PWY- | ||
** '''2''' reactions found over '''6''' reactions in the full pathway | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6433]] |
+ | ** '''17''' reactions found over '''22''' reactions in the full pathway | ||
+ | * [[PWY-6958]] | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7049]] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7725]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6598]] | ||
** '''4''' reactions found over '''5''' reactions in the full pathway | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-7601]] |
− | ** ''' | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7726]] |
− | + | ** '''8''' reactions found over '''13''' reactions in the full pathway | |
− | + | * [[PWY-7728]] | |
− | ** ''' | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | ||
− | ** ''' | ||
</div> | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=362793}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=349863}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=74.659256 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=17}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=18}} |
Revision as of 09:28, 27 August 2019
Contents
Gene SJ06882
- transcription-direction:
- positive
- right-end-position:
- 362793
- left-end-position:
- 349863
- centisome-position:
- 74.659256
Organism(s) associated with this gene
Reaction(s) associated
- PROTEIN-TYROSINE-PHOSPHATASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11750
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12969
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13001
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13302
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13303
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13304
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13305
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13444
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14485
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14494
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16021
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16096
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16113
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16130
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16155
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17110
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5080
- 3 reactions found over 4 reactions in the full pathway
- PWY-7592
- 5 reactions found over 5 reactions in the full pathway
- PWY-5353
- 7 reactions found over 8 reactions in the full pathway
- PWY-7724
- 4 reactions found over 7 reactions in the full pathway
- PWY-7619
- 3 reactions found over 5 reactions in the full pathway
- PWY-7602
- 4 reactions found over 7 reactions in the full pathway
- PWY-7036
- 14 reactions found over 16 reactions in the full pathway
- PWY-7053
- 3 reactions found over 7 reactions in the full pathway
- PWY-7606
- 8 reactions found over 14 reactions in the full pathway
- PWY-7727
- 2 reactions found over 6 reactions in the full pathway
- PWY-6433
- 17 reactions found over 22 reactions in the full pathway
- PWY-6958
- 5 reactions found over 8 reactions in the full pathway
- PWY-7049
- 4 reactions found over 7 reactions in the full pathway
- PWY-7725
- 5 reactions found over 6 reactions in the full pathway
- PWY-6598
- 4 reactions found over 5 reactions in the full pathway
- PWY-7601
- 5 reactions found over 7 reactions in the full pathway
- PWY-7726
- 8 reactions found over 13 reactions in the full pathway
- PWY-7728
- 2 reactions found over 5 reactions in the full pathway