Difference between revisions of "CPD-8075"

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(Created page with "Category:gene == Gene SJ13797 == * transcription-direction: ** positive * right-end-position: ** 93472 * left-end-position: ** 84622 * centisome-position: ** 25.631226...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name: **...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ13797 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
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* transcription-direction:
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* direction:
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** positive
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** left-to-right
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* right-end-position:
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* common-name:
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** 93472
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** lysine-trna ligase
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* left-end-position:
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* ec-number:
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** 84622
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** [http://enzyme.expasy.org/EC/6.1.1.6 ec-6.1.1.6]
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* centisome-position:
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== Reaction formula ==
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** 25.631226   
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* 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ21008]]
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== Reaction(s) associated ==
 
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* [[PANTOATE-BETA-ALANINE-LIG-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* Gene: [[SJ12237]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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** Category: [[annotation]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Pathway(s) associated ==
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** Category: [[orthology]]
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* [[PANTO-PWY]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* Gene: [[SJ21009]]
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{{#set: transcription-direction=positive}}
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** Category: [[annotation]]
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{{#set: right-end-position=93472}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=84622}}
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== Pathway(s) ==
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{{#set: centisome-position=25.631226    }}
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** '''21''' reactions found over '''21''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20793 20793]
 +
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P41258 P41258]
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** [http://www.uniprot.org/uniprot/P46861 P46861]
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** [http://www.uniprot.org/uniprot/P47382 P47382]
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** [http://www.uniprot.org/uniprot/O57963 O57963]
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** [http://www.uniprot.org/uniprot/O51603 O51603]
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** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
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** [http://www.uniprot.org/uniprot/O83650 O83650]
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** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
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** [http://www.uniprot.org/uniprot/P43825 P43825]
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** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
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** [http://www.uniprot.org/uniprot/O84786 O84786]
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** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
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** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
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** [http://www.uniprot.org/uniprot/P56126 P56126]
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** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
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** [http://www.uniprot.org/uniprot/O67258 O67258]
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** [http://www.uniprot.org/uniprot/O84002 O84002]
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** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
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** [http://www.uniprot.org/uniprot/P32048 P32048]
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** [http://www.uniprot.org/uniprot/P37879 P37879]
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** [http://www.uniprot.org/uniprot/Q48986 Q48986]
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** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
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** [http://www.uniprot.org/uniprot/P37477 P37477]
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** [http://www.uniprot.org/uniprot/P75500 P75500]
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** [http://www.uniprot.org/uniprot/P95970 P95970]
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** [http://www.uniprot.org/uniprot/P73443 P73443]
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** [http://www.uniprot.org/uniprot/P15180 P15180]
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** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
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** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
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** [http://www.uniprot.org/uniprot/Q43776 Q43776]
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** [http://www.uniprot.org/uniprot/O74059 O74059]
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** [http://www.uniprot.org/uniprot/O30522 O30522]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=lysine-trna ligase}}
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{{#set: ec-number=ec-6.1.1.6}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction LYSINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • lysine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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