Difference between revisions of "CPD-148"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14047 RXN-14047] == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/4.2...")
(Created page with "Category:gene == Gene SJ05117 == * transcription-direction: ** positive * right-end-position: ** 17078 * left-end-position: ** 11895 * centisome-position: ** 12.326552...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14047 RXN-14047] ==
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== Gene SJ05117 ==
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* direction:
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* transcription-direction:
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** reversible
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** positive
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* ec-number:
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* right-end-position:
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** [http://enzyme.expasy.org/EC/4.2.1.3 ec-4.2.1.3]
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** 17078
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== Reaction formula ==
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* left-end-position:
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* 1 [[CIT]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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** 11895
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== Gene(s) associated with this reaction ==
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* centisome-position:
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* Gene: [[SJ22396]]
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** 12.326552   
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** Category: [[orthology]]
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== Organism(s) associated with this gene ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ18471]]
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== Reaction(s) associated ==
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* [[3.1.3.16-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[4-NITROPHENYLPHOSPHATASE-RXN]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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== Pathway(s)  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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{{#set: transcription-direction=positive}}
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: right-end-position=17078}}
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: left-end-position=11895}}
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== External links  ==
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{{#set: centisome-position=12.326552    }}
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* RHEA:
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10339 10339]
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{{#set: nb reaction associated=2}}
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01324 R01324]
 
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{{#set: direction=reversible}}
 
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{{#set: ec-number=ec-4.2.1.3}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=0}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ05117

  • transcription-direction:
    • positive
  • right-end-position:
    • 17078
  • left-end-position:
    • 11895
  • centisome-position:
    • 12.326552

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-148&oldid=34282"