Difference between revisions of "PRPP"
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(Created page with "Category:gene == Gene SJ16897 == * transcription-direction: ** negative * right-end-position: ** 67856 * left-end-position: ** 57781 * centisome-position: ** 20.95861...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] == * direction: ** left-to-right * common-name: ** 2,3,4-saturated f...") |
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− | [[Category: | + | [[Category:reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] == |
− | * | + | * direction: |
− | ** | + | ** left-to-right |
− | * | + | * common-name: |
− | ** | + | ** 2,3,4-saturated fatty acyl-coa synthetase |
− | * | + | ** fatty acyl-coa synthetase |
− | ** | + | ** long-chain fatty acid-coa ligase |
− | * | + | * ec-number: |
− | ** | + | ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] |
− | == | + | * synonymous: |
− | * [[ | + | ** acyl-activating enzyme |
− | == | + | ** fatty acid thiokinase (long-chain) |
− | * [[ | + | == Reaction formula == |
+ | * 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] | ||
+ | == Gene(s) associated with this reaction == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * Gene: [[SJ05591]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | == Pathway(s) | + | * Gene: [[SJ03650]] |
− | * [[PWY- | + | ** Category: [[annotation]] |
− | ** '''7''' reactions found over ''' | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | {{#set: | + | ** Category: [[orthology]] |
− | {{#set: | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | * Gene: [[SJ08692]] |
− | {{#set: | + | ** Category: [[annotation]] |
− | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | {{#set: nb | + | * Gene: [[SJ08690]] |
− | {{#set: | + | ** Category: [[annotation]] |
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ13972]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08691]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) == | ||
+ | * [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P18163 P18163] | ||
+ | ** [http://www.uniprot.org/uniprot/P39518 P39518] | ||
+ | ** [http://www.uniprot.org/uniprot/O51162 O51162] | ||
+ | ** [http://www.uniprot.org/uniprot/P39002 P39002] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q10776 Q10776] | ||
+ | ** [http://www.uniprot.org/uniprot/O83181 O83181] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4] | ||
+ | ** [http://www.uniprot.org/uniprot/P94547 P94547] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0] | ||
+ | ** [http://www.uniprot.org/uniprot/P44446 P44446] | ||
+ | ** [http://www.uniprot.org/uniprot/O30039 O30039] | ||
+ | ** [http://www.uniprot.org/uniprot/O51539 O51539] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7] | ||
+ | ** [http://www.uniprot.org/uniprot/P33121 P33121] | ||
+ | ** [http://www.uniprot.org/uniprot/P33124 P33124] | ||
+ | ** [http://www.uniprot.org/uniprot/P30624 P30624] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02602 Q02602] | ||
+ | ** [http://www.uniprot.org/uniprot/P69451 P69451] | ||
+ | ** [http://www.uniprot.org/uniprot/P69452 P69452] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0] | ||
+ | ** [http://www.uniprot.org/uniprot/P47912 P47912] | ||
+ | ** [http://www.uniprot.org/uniprot/P73004 P73004] | ||
+ | ** [http://www.uniprot.org/uniprot/O81614 O81614] | ||
+ | ** [http://www.uniprot.org/uniprot/O15840 O15840] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96537 Q96537] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96538 Q96538] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96338 Q96338] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T009 Q9T009] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0] | ||
+ | ** [http://www.uniprot.org/uniprot/O60135 O60135] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=fatty acyl-coa synthetase|2,3,4-saturated fatty acyl-coa synthetase|long-chain fatty acid-coa ligase}} | ||
+ | {{#set: ec-number=ec-6.2.1.3}} | ||
+ | {{#set: synonymous=fatty acid thiokinase (long-chain)|acyl-activating enzyme}} | ||
+ | {{#set: nb gene associated=6}} | ||
+ | {{#set: nb pathway associated=4}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:28, 27 August 2019
Contents
Reaction ACYLCOASYN-RXN
- direction:
- left-to-right
- common-name:
- 2,3,4-saturated fatty acyl-coa synthetase
- fatty acyl-coa synthetase
- long-chain fatty acid-coa ligase
- ec-number:
- synonymous:
- acyl-activating enzyme
- fatty acid thiokinase (long-chain)
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ05591
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03650
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08692
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ08690
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ13972
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08691
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7288, fatty acid β-oxidation (peroxisome, yeast): PWY-7288
- 4 reactions found over 5 reactions in the full pathway
- PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
- 6 reactions found over 7 reactions in the full pathway
- FAO-PWY, fatty acid β-oxidation I: FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links