Difference between revisions of "Oligonucleotides"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLACYLYLCOA-HYDROXY-RXN METHYLACYLYLCOA-HYDROXY-RXN] == * direction: ** reversible * common-nam...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16094 RXN-16094] == * direction: ** left-to-right * common-name: ** 3-oxo-(11z,14z)-icosa-11,14...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLACYLYLCOA-HYDROXY-RXN METHYLACYLYLCOA-HYDROXY-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16094 RXN-16094] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** methylacrylyl-coa hydratase
+
** 3-oxo-(11z,14z)-icosa-11,14-dienoyl-coa synthase
−
** 3-hydroxy-isobutyryl-coa hydro-lyase
 
−
** enoyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12173]][c] '''<=>''' 1 [[METHACRYLYL-COA]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD-18]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-17346]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11672]]
−
* Gene: [[SJ03913]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ19629]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ00613]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ06616]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
+
* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7725 PWY-7725]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6598]], sciadonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6598 PWY-6598]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7601 PWY-7601]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: common-name=3-oxo-(11z,14z)-icosa-11,14-dienoyl-coa synthase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31178 31178]
+
{{#set: ec-number=ec-2.3.1.199}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04224 R04224]
+
{{#set: nb pathway associated=3}}
−
* UNIPROT:
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P21177 P21177]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
 
−
** [http://www.uniprot.org/uniprot/O29814 O29814]
 
−
** [http://www.uniprot.org/uniprot/O29299 O29299]
 
−
** [http://www.uniprot.org/uniprot/O34893 O34893]
 
−
** [http://www.uniprot.org/uniprot/O23520 O23520]
 
−
** [http://www.uniprot.org/uniprot/P76082 P76082]
 
−
** [http://www.uniprot.org/uniprot/P64016 P64016]
 
−
** [http://www.uniprot.org/uniprot/P07896 P07896]
 
−
** [http://www.uniprot.org/uniprot/O53419 O53419]
 
−
** [http://www.uniprot.org/uniprot/P94549 P94549]
 
−
** [http://www.uniprot.org/uniprot/Q13825 Q13825]
 
−
** [http://www.uniprot.org/uniprot/P45361 P45361]
 
−
** [http://www.uniprot.org/uniprot/P28793 P28793]
 
−
** [http://www.uniprot.org/uniprot/P14604 P14604]
 
−
** [http://www.uniprot.org/uniprot/P22414 P22414]
 
−
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
 
−
** [http://www.uniprot.org/uniprot/P34559 P34559]
 
−
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
 
−
** [http://www.uniprot.org/uniprot/P55100 P55100]
 
−
** [http://www.uniprot.org/uniprot/P53526 P53526]
 
−
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
−
** [http://www.uniprot.org/uniprot/O52797 O52797]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-hydroxy-isobutyryl-coa hydro-lyase|enoyl-coa hydratase|methylacrylyl-coa hydratase}}
 
−
{{#set: ec-number=ec-4.2.1.17}}
 
−
{{#set: nb gene associated=6}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-16094

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-(11z,14z)-icosa-11,14-dienoyl-coa synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7725, arachidonate biosynthesis V (8-detaturase, mammals): PWY-7725
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6598, sciadonate biosynthesis: PWY-6598
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7601, arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): PWY-7601
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=Oligonucleotides&oldid=34622"