Difference between revisions of "URACIL"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5482 RXN-5482] == * direction: ** left-to-right * common-name: ** udp-l-rhamnose synthase == Re...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1134 RXN0-1134] == * direction: ** left-to-right * common-name: ** pyruvate:[dihydrolipoyllysi...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1134 RXN0-1134] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase |
+ | ** pyruvate dehydrogenase (nad+) | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.2.4.1 ec-1.2.4.1] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pyruvate-dehydrogenase-lipoate]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Pyruvate-dehydrogenase-acetylDHlipoyl]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ01042]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ19470]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ09312]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ00971]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ14925]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA: [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEHYD-PWY PYRUVDEHYD-PWY] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01699 R01699] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P06959 P06959] | ||
+ | ** [http://www.uniprot.org/uniprot/P26267 P26267] | ||
+ | ** [http://www.uniprot.org/uniprot/P35485 P35485] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59097 Q59097] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9N1X8 Q9N1X8] | ||
+ | ** [http://www.uniprot.org/uniprot/P45119 P45119] | ||
+ | ** [http://www.uniprot.org/uniprot/P11966 P11966] | ||
+ | ** [http://www.uniprot.org/uniprot/P35488 P35488] | ||
+ | ** [http://www.uniprot.org/uniprot/P47515 P47515] | ||
+ | ** [http://www.uniprot.org/uniprot/P21882 P21882] | ||
+ | ** [http://www.uniprot.org/uniprot/P47516 P47516] | ||
+ | ** [http://www.uniprot.org/uniprot/P21881 P21881] | ||
+ | ** [http://www.uniprot.org/uniprot/P21873 P21873] | ||
+ | ** [http://www.uniprot.org/uniprot/P16387 P16387] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AFG8 P0AFG8] | ||
+ | ** [http://www.uniprot.org/uniprot/P08559 P08559] | ||
+ | ** [http://www.uniprot.org/uniprot/P11177 P11177] | ||
+ | ** [http://www.uniprot.org/uniprot/P29803 P29803] | ||
+ | ** [http://www.uniprot.org/uniprot/P29804 P29804] | ||
+ | ** [http://www.uniprot.org/uniprot/P26284 P26284] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JU08 Q9JU08] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CJD6 Q9CJD6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JU07 Q9JU07] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CJD5 Q9CJD5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09171 Q09171] | ||
+ | ** [http://www.uniprot.org/uniprot/P52901 P52901] | ||
+ | ** [http://www.uniprot.org/uniprot/P79931 P79931] | ||
+ | ** [http://www.uniprot.org/uniprot/P79932 P79932] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9D051 Q9D051] | ||
+ | ** [http://www.uniprot.org/uniprot/P10801 P10801] | ||
+ | ** [http://www.uniprot.org/uniprot/P21874 P21874] | ||
+ | ** [http://www.uniprot.org/uniprot/P49432 P49432] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59820 Q59820] | ||
+ | ** [http://www.uniprot.org/uniprot/P35486 P35486] | ||
+ | ** [http://www.uniprot.org/uniprot/P35487 P35487] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06437 Q06437] | ||
+ | ** [http://www.uniprot.org/uniprot/P32473 P32473] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59107 Q59107] | ||
+ | ** [http://www.uniprot.org/uniprot/P73405 P73405] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49109 Q49109] | ||
+ | ** [http://www.uniprot.org/uniprot/O48685 O48685] | ||
+ | ** [http://www.uniprot.org/uniprot/P52902 P52902] | ||
+ | ** [http://www.uniprot.org/uniprot/P52904 P52904] | ||
+ | ** [http://www.uniprot.org/uniprot/P52903 P52903] | ||
+ | ** [http://www.uniprot.org/uniprot/O66112 O66112] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Y8I5 Q9Y8I5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Y8I6 Q9Y8I6] | ||
+ | ** [http://www.uniprot.org/uniprot/O69478 O69478] | ||
+ | ** [http://www.uniprot.org/uniprot/P10802 P10802] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=pyruvate dehydrogenase (nad+)|pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-1.2.4.1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=5}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=annotation|orthology}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:29, 27 August 2019
Contents
Reaction RXN0-1134
- direction:
- left-to-right
- common-name:
- pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase
- pyruvate dehydrogenase (nad+)
- ec-number:
Reaction formula
- 1 PROTON[c] + 1 PYRUVATE[c] + 1 Pyruvate-dehydrogenase-lipoate[c] => 1 CARBON-DIOXIDE[c] + 1 Pyruvate-dehydrogenase-acetylDHlipoyl[c]
Gene(s) associated with this reaction
- Gene: SJ01042
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ19470
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09312
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00971
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ14925
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PYRUVDEHYD-PWY, pyruvate decarboxylation to acetyl CoA: PYRUVDEHYD-PWY
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- LIGAND-RXN:
- UNIPROT:
- P06959
- P26267
- P35485
- Q59097
- Q9N1X8
- P45119
- P11966
- P35488
- P47515
- P21882
- P47516
- P21881
- P21873
- P16387
- P0AFG8
- P08559
- P11177
- P29803
- P29804
- P26284
- Q9JU08
- Q9CJD6
- Q9JU07
- Q9CJD5
- Q09171
- P52901
- P79931
- P79932
- Q9D051
- P10801
- P21874
- P49432
- Q59820
- P35486
- P35487
- Q06437
- P32473
- Q59107
- P73405
- Q49109
- O48685
- P52902
- P52904
- P52903
- O66112
- Q9Y8I5
- Q9Y8I6
- O69478
- P10802
Property "Common-name" (as page type) with input value "pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.