Difference between revisions of "RXN-7922"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** left-to-right * common-name: ** nucleotide diphos...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] == * direction: ** left-to-right * common-name: ** dcmp kinase * ec-number: ** [...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nucleotide diphosphatase
+
** dcmp kinase
−
** deoxyuridine triphosphatase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23]
+
** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25]
−
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
+
** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DCDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ04934]]
+
* Gene: [[SJ01032]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20076]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21099]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22529]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08159]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08998]]
+
* Gene: [[SJ21967]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07337]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12893]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08856]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19894]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19893]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12166]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 61: Line 42:
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25095 25095]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01665 R01665]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
 
−
** [http://www.uniprot.org/uniprot/P33316 P33316]
 
−
** [http://www.uniprot.org/uniprot/O15923 O15923]
 
−
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 
−
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 
−
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 
−
** [http://www.uniprot.org/uniprot/P43792 P43792]
 
−
** [http://www.uniprot.org/uniprot/P32518 P32518]
 
−
** [http://www.uniprot.org/uniprot/P68635 P68635]
 
−
** [http://www.uniprot.org/uniprot/P68634 P68634]
 
−
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 
−
** [http://www.uniprot.org/uniprot/P03195 P03195]
 
−
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 
−
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 
−
** [http://www.uniprot.org/uniprot/P33317 P33317]
 
−
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 
−
** [http://www.uniprot.org/uniprot/P43058 P43058]
 
−
** [http://www.uniprot.org/uniprot/O80091 O80091]
 
−
** [http://www.uniprot.org/uniprot/O36404 O36404]
 
−
** [http://www.uniprot.org/uniprot/O41033 O41033]
 
−
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 
−
** [http://www.uniprot.org/uniprot/O39251 O39251]
 
−
** [http://www.uniprot.org/uniprot/O01934 O01934]
 
−
** [http://www.uniprot.org/uniprot/P10234 P10234]
 
−
** [http://www.uniprot.org/uniprot/P06968 P06968]
 
−
** [http://www.uniprot.org/uniprot/P09254 P09254]
 
−
** [http://www.uniprot.org/uniprot/P28892 P28892]
 
−
** [http://www.uniprot.org/uniprot/P28893 P28893]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nucleotide diphosphatase|deoxyuridine triphosphatase}}
+
{{#set: common-name=dcmp kinase}}
−
{{#set: ec-number=ec-3.6.1.9|ec-3.6.1.23}}
+
{{#set: ec-number=ec-2.7.4.14|ec-2.7.4.25|ec-2.7.4.13}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:30, 27 August 2019

Reaction RXN-7913

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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