Difference between revisions of "QUINOPRIBOTRANS-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDR_LPAREN_nadp_RPAREN_h GDR_LPAREN_nadp_RPAREN_h] == * direction: ** left-to-right * common-name:...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN] == * direction: ** left-to-right...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** naringenin-chalcone synthase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.3.1.74 ec-2.3.1.74] | ||
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 3 [[MALONYL-COA]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 3 [[PROTON]][c] '''=>''' 3 [[CARBON-DIOXIDE]][c] '''+''' 4 [[CO-A]][c] '''+''' 1 [[CPD-20012]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ18059]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ20077]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6316]], aromatic polyketides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6316 PWY-6316] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7897]], flavonoid di-C-glucosylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7897 PWY-7897] | ||
+ | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11129 11129] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01613 R01613] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q43188 Q43188] | ||
+ | ** [http://www.uniprot.org/uniprot/O04934 O04934] | ||
+ | ** [http://www.uniprot.org/uniprot/P17957 P17957] | ||
+ | ** [http://www.uniprot.org/uniprot/P30081 P30081] | ||
+ | ** [http://www.uniprot.org/uniprot/P30080 P30080] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S9C0 Q9S9C0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S9B9 Q9S9B9] | ||
+ | ** [http://www.uniprot.org/uniprot/P23419 P23419] | ||
+ | ** [http://www.uniprot.org/uniprot/P26018 P26018] | ||
+ | ** [http://www.uniprot.org/uniprot/P22928 P22928] | ||
+ | ** [http://www.uniprot.org/uniprot/P30079 P30079] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01287 Q01287] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01288 Q01288] | ||
+ | ** [http://www.uniprot.org/uniprot/P51078 P51078] | ||
+ | ** [http://www.uniprot.org/uniprot/P51080 P51080] | ||
+ | ** [http://www.uniprot.org/uniprot/P30078 P30078] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01286 Q01286] | ||
+ | ** [http://www.uniprot.org/uniprot/P30073 P30073] | ||
+ | ** [http://www.uniprot.org/uniprot/P30074 P30074] | ||
+ | ** [http://www.uniprot.org/uniprot/P30076 P30076] | ||
+ | ** [http://www.uniprot.org/uniprot/P30077 P30077] | ||
+ | ** [http://www.uniprot.org/uniprot/P51089 P51089] | ||
+ | ** [http://www.uniprot.org/uniprot/P51075 P51075] | ||
+ | ** [http://www.uniprot.org/uniprot/P16107 P16107] | ||
+ | ** [http://www.uniprot.org/uniprot/P51077 P51077] | ||
+ | ** [http://www.uniprot.org/uniprot/P51079 P51079] | ||
+ | ** [http://www.uniprot.org/uniprot/P30075 P30075] | ||
+ | ** [http://www.uniprot.org/uniprot/P51081 P51081] | ||
+ | ** [http://www.uniprot.org/uniprot/P51082 P51082] | ||
+ | ** [http://www.uniprot.org/uniprot/P48390 P48390] | ||
+ | ** [http://www.uniprot.org/uniprot/P48405 P48405] | ||
+ | ** [http://www.uniprot.org/uniprot/P48406 P48406] | ||
+ | ** [http://www.uniprot.org/uniprot/P23569 P23569] | ||
+ | ** [http://www.uniprot.org/uniprot/P13416 P13416] | ||
+ | ** [http://www.uniprot.org/uniprot/P13417 P13417] | ||
+ | ** [http://www.uniprot.org/uniprot/P17818 P17818] | ||
+ | ** [http://www.uniprot.org/uniprot/P13114 P13114] | ||
+ | ** [http://www.uniprot.org/uniprot/P08894 P08894] | ||
+ | ** [http://www.uniprot.org/uniprot/P22924 P22924] | ||
+ | ** [http://www.uniprot.org/uniprot/P22925 P22925] | ||
+ | ** [http://www.uniprot.org/uniprot/P22926 P22926] | ||
+ | ** [http://www.uniprot.org/uniprot/P22927 P22927] | ||
+ | ** [http://www.uniprot.org/uniprot/P06515 P06515] | ||
+ | ** [http://www.uniprot.org/uniprot/P24826 P24826] | ||
+ | ** [http://www.uniprot.org/uniprot/P19168 P19168] | ||
+ | ** [http://www.uniprot.org/uniprot/P24825 P24825] | ||
+ | ** [http://www.uniprot.org/uniprot/P24824 P24824] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40005 Q40005] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96562 Q96562] | ||
+ | ** [http://www.uniprot.org/uniprot/O22047 O22047] | ||
+ | ** [http://www.uniprot.org/uniprot/O04971 O04971] | ||
+ | ** [http://www.uniprot.org/uniprot/P48389 P48389] | ||
+ | ** [http://www.uniprot.org/uniprot/P48398 P48398] | ||
+ | ** [http://www.uniprot.org/uniprot/P48399 P48399] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96568 Q96568] | ||
+ | ** [http://www.uniprot.org/uniprot/P48397 P48397] | ||
+ | ** [http://www.uniprot.org/uniprot/O04966 O04966] | ||
+ | ** [http://www.uniprot.org/uniprot/O04967 O04967] | ||
+ | ** [http://www.uniprot.org/uniprot/O04968 O04968] | ||
+ | ** [http://www.uniprot.org/uniprot/O04969 O04969] | ||
+ | ** [http://www.uniprot.org/uniprot/O04970 O04970] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41292 Q41292] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=naringenin-chalcone synthase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.3.1.74}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=annotation|orthology}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Revision as of 09:30, 27 August 2019
Contents
Reaction NARINGENIN-CHALCONE-SYNTHASE-RXN
- direction:
- left-to-right
- common-name:
- naringenin-chalcone synthase
- ec-number:
Reaction formula
- 3 MALONYL-COA[c] + 1 P-COUMAROYL-COA[c] + 3 PROTON[c] => 3 CARBON-DIOXIDE[c] + 4 CO-A[c] + 1 CPD-20012[c]
Gene(s) associated with this reaction
- Gene: SJ18059
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ20077
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
- 6 reactions found over 10 reactions in the full pathway
- PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-5135, xanthohumol biosynthesis: PWY-5135
- 2 reactions found over 4 reactions in the full pathway
- PWY-7397, naringenin biosynthesis (engineered): PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-6316, aromatic polyketides biosynthesis: PWY-6316
- 1 reactions found over 2 reactions in the full pathway
- PWY-7897, flavonoid di-C-glucosylation: PWY-7897
- 3 reactions found over 15 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- Q43188
- O04934
- P17957
- P30081
- P30080
- Q9S9C0
- Q9S9B9
- P23419
- P26018
- P22928
- P30079
- Q01287
- Q01288
- P51078
- P51080
- P30078
- Q01286
- P30073
- P30074
- P30076
- P30077
- P51089
- P51075
- P16107
- P51077
- P51079
- P30075
- P51081
- P51082
- P48390
- P48405
- P48406
- P23569
- P13416
- P13417
- P17818
- P13114
- P08894
- P22924
- P22925
- P22926
- P22927
- P06515
- P24826
- P19168
- P24825
- P24824
- Q40005
- Q96562
- O22047
- O04971
- P48389
- P48398
- P48399
- Q96568
- P48397
- O04966
- O04967
- O04968
- O04969
- O04970
- Q41292