Difference between revisions of "G6PBDH"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-NAD+-RXN DNA-LIGASE-NAD+-RXN] == * direction: ** left-to-right * common-name: ** dna lig...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14275 RXN-14275] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-NAD+-RXN DNA-LIGASE-NAD+-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14275 RXN-14275] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** dna ligase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
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** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19]
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** [http://enzyme.expasy.org/EC/6.5.1.2 ec-6.5.1.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-14916]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD0-2106]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ15543]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19344]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31196 31196]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00382 R00382]
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** [http://www.genome.jp/dbget-bin/www_bget?R04745 R04745]
−
* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P47496 P47496]
 
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** [http://www.uniprot.org/uniprot/Q9PHT0 Q9PHT0]
 
−
** [http://www.uniprot.org/uniprot/Q9CIE4 Q9CIE4]
 
−
** [http://www.uniprot.org/uniprot/P43813 P43813]
 
−
** [http://www.uniprot.org/uniprot/O31498 O31498]
 
−
** [http://www.uniprot.org/uniprot/O25336 O25336]
 
−
** [http://www.uniprot.org/uniprot/O51502 O51502]
 
−
** [http://www.uniprot.org/uniprot/P15042 P15042]
 
−
** [http://www.uniprot.org/uniprot/P28719 P28719]
 
−
** [http://www.uniprot.org/uniprot/P49422 P49422]
 
−
** [http://www.uniprot.org/uniprot/P78021 P78021]
 
−
** [http://www.uniprot.org/uniprot/P72588 P72588]
 
−
** [http://www.uniprot.org/uniprot/Q49078 Q49078]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna ligase}}
+
{{#set: ec-number=ec-1.1.1.m19}}
−
{{#set: ec-number=ec-6.5.1.2|ec-6.5.1.6}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 09:31, 27 August 2019

Reaction RXN-14275

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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