Difference between revisions of "RXN-17024"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] == * direction: ** reversible * common-name: ** orotate phosphor...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8032 RXN-8032] == * direction: ** reversible * common-name: ** 3-ketopimelyl-coa thiolase * ec-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8032 RXN-8032] ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** orotate phosphoribosyltransferase
+
** 3-ketopimelyl-coa thiolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
+
* 1 [[3-OXOPIMELOYL-COA]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[GLUTARYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02816]]
+
* Gene: [[SJ15041]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
+
* [[P321-PWY]], benzoyl-CoA degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P321-PWY P321-PWY]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
+
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
+
* [[CENTBENZCOA-PWY]], benzoyl-CoA degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=CENTBENZCOA-PWY CENTBENZCOA-PWY]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10383 10383]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05586 R05586]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08309 P08309]
 
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
 
−
** [http://www.uniprot.org/uniprot/P18132 P18132]
 
−
** [http://www.uniprot.org/uniprot/P77889 P77889]
 
−
** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
 
−
** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
 
−
** [http://www.uniprot.org/uniprot/O67742 O67742]
 
−
** [http://www.uniprot.org/uniprot/O58855 O58855]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
 
−
** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
 
−
** [http://www.uniprot.org/uniprot/P56814 P56814]
 
−
** [http://www.uniprot.org/uniprot/Q58509 Q58509]
 
−
** [http://www.uniprot.org/uniprot/O28533 O28533]
 
−
** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
 
−
** [http://www.uniprot.org/uniprot/P25972 P25972]
 
−
** [http://www.uniprot.org/uniprot/O27888 O27888]
 
−
** [http://www.uniprot.org/uniprot/P65915 P65915]
 
−
** [http://www.uniprot.org/uniprot/P46534 P46534]
 
−
** [http://www.uniprot.org/uniprot/P43855 P43855]
 
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
 
−
** [http://www.uniprot.org/uniprot/P18904 P18904]
 
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
 
−
** [http://www.uniprot.org/uniprot/P21846 P21846]
 
−
** [http://www.uniprot.org/uniprot/P35788 P35788]
 
−
** [http://www.uniprot.org/uniprot/P08870 P08870]
 
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 
−
** [http://www.uniprot.org/uniprot/Q45918 Q45918]
 
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 
−
** [http://www.uniprot.org/uniprot/P41923 P41923]
 
−
** [http://www.uniprot.org/uniprot/Q55574 Q55574]
 
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 
−
** [http://www.uniprot.org/uniprot/O76139 O76139]
 
−
** [http://www.uniprot.org/uniprot/O61790 O61790]
 
−
** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
 
−
** [http://www.uniprot.org/uniprot/O94331 O94331]
 
−
** [http://www.uniprot.org/uniprot/P30402 P30402]
 
−
** [http://www.uniprot.org/uniprot/P13298 P13298]
 
−
** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=orotate phosphoribosyltransferase}}
+
{{#set: common-name=3-ketopimelyl-coa thiolase}}
−
{{#set: ec-number=ec-2.4.2.10}}
+
{{#set: ec-number=ec-2.3.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:31, 27 August 2019

Reaction RXN-8032

  • direction:
    • reversible
  • common-name:
    • 3-ketopimelyl-coa thiolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P321-PWY, benzoyl-CoA degradation III (anaerobic): P321-PWY
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 6 reactions found over 15 reactions in the full pathway
  • CENTBENZCOA-PWY, benzoyl-CoA degradation II (anaerobic): CENTBENZCOA-PWY
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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