Difference between revisions of "SJ12703"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ16402 == * transcription-direction: ** positive * right-end-position: ** 8067 * left-end-position: ** 54 * centisome-position: ** 1.911741300e-2 ==...")
(Created page with "Category:gene == Gene SJ04418 == * transcription-direction: ** negative * right-end-position: ** 96925 * left-end-position: ** 89463 * centisome-position: ** 83.344666...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ16402 ==
+
== Gene SJ04418 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 8067
+
** 96925
 
* left-end-position:
 
* left-end-position:
−
** 54
+
** 89463
 
* centisome-position:
 
* centisome-position:
−
** 1.911741300e-2
+
** 83.344666   
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
−
* [[3.2.1.21-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[3.2.1.39-RXN]]
+
* [[NAPHTHOATE-SYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10769]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[NPHS]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13721]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10773]]
+
* [[RXN-6384]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13602]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13603]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14179]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5341]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8036]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9674]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6788]]
+
* [[VALDEG-PWY]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7091]]
+
* [[PWY-5837]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7092]]
+
* [[PWY-3941]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-3121]]
+
* [[PWY-7574]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5176]]
+
{{#set: transcription-direction=negative}}
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
{{#set: right-end-position=96925}}
−
* [[PWY-6002]]
+
{{#set: left-end-position=89463}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: centisome-position=83.344666    }}
−
{{#set: transcription-direction=positive}}
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
{{#set: right-end-position=8067}}
+
{{#set: nb reaction associated=5}}
−
{{#set: left-end-position=54}}
+
{{#set: nb pathway associated=4}}
−
{{#set: centisome-position=1.911741300e-2}}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=10}}
 
−
{{#set: nb pathway associated=6}}
 

Revision as of 20:26, 18 December 2020

Gene SJ04418

  • transcription-direction:
    • negative
  • right-end-position:
    • 96925
  • left-end-position:
    • 89463
  • centisome-position:
    • 83.344666

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5837
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-3941
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7574
    • 3 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12703&oldid=43752"