Difference between revisions of "SJ14981"

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(Created page with "Category:gene == Gene SJ22396 == * transcription-direction: ** negative * right-end-position: ** 145060 * left-end-position: ** 138496 * centisome-position: ** 78.11701...")
(Created page with "Category:gene == Gene SJ16939 == * transcription-direction: ** positive * right-end-position: ** 370130 * left-end-position: ** 356124 * centisome-position: ** 52.217365...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ22396 ==
+
== Gene SJ16939 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 145060
+
** 370130
 
* left-end-position:
 
* left-end-position:
−
** 138496
+
** 356124
 
* centisome-position:
 
* centisome-position:
−
** 78.11701    
+
** 52.217365    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3-ISOPROPYLMALISOM-RXN]]
+
* [[3.4.11.18-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ACONITATEDEHYDR-RXN]]
+
* [[RXN-17873]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ACONITATEHYDR-RXN]]
+
* [[RXN-17874]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[IMDHT_LPAREN_3c2hmp_RPAREN_]]
+
* [[RXN-17875]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[R-2-METHYLMALATE-DEHYDRATASE-RXN]]
+
* [[RXN-17876]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13163]]
+
* [[RXN-17877]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-17878]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14047]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-8991]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7800]]
−
* [[LEUSYN-PWY]]
+
** '''6''' reactions found over '''21''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7799]]
−
* [[PWY-6871]]
+
** '''7''' reactions found over '''14''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[TCA]]
+
{{#set: right-end-position=370130}}
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
{{#set: left-end-position=356124}}
−
* [[PWY-6549]]
+
{{#set: centisome-position=52.217365   }}
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
* [[PWY-5392]]
+
{{#set: nb reaction associated=7}}
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
{{#set: nb pathway associated=2}}
−
* [[PWY-5690]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P105-PWY]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7254]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5750]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P23-PWY]]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-5101]]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7698]]
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=145060}}
 
−
{{#set: left-end-position=138496}}
 
−
{{#set: centisome-position=78.11701   }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=8}}
 
−
{{#set: nb pathway associated=20}}
 

Revision as of 20:27, 18 December 2020

Gene SJ16939

  • transcription-direction:
    • positive
  • right-end-position:
    • 370130
  • left-end-position:
    • 356124
  • centisome-position:
    • 52.217365

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7800
    • 6 reactions found over 21 reactions in the full pathway
  • PWY-7799
    • 7 reactions found over 14 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ14981&oldid=44354"