Difference between revisions of "SJ09104"
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(Created page with "Category:gene == Gene SJ15767 == * transcription-direction: ** negative * right-end-position: ** 716036 * left-end-position: ** 698911 * centisome-position: ** 57.40849...") |
(Created page with "Category:gene == Gene SJ19669 == * transcription-direction: ** negative * right-end-position: ** 369144 * left-end-position: ** 350818 * centisome-position: ** 55.55955...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ19669 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 369144 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 350818 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 55.55955 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_sterols_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ACOAD1f]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ACYL-COA-OXIDASE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ACYLCOADEHYDROG-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[BUTYRYL-COA-DEHYDROGENASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
− | ** Category: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | + | * [[RXN-10696]] |
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-10706]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-10707]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-11026]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12518]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12669]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-13449]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14264]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14576]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14771]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14775]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14785]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14789]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14796]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-16134]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-17113]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''8''' reactions found over ''' | + | * [[FAO-PWY]] |
− | * [[PWY- | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-6583]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5022]] | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5676]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[P163-PWY]] | ||
+ | ** '''3''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-5677]] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[CENTFERM-PWY]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[P162-PWY]] | ||
+ | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P3-PWY]] | ||
+ | ** '''3''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-735]] | ||
+ | ** '''16''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-7007]] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7288]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5136]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY66-391]] | ||
** '''6''' reactions found over '''7''' reactions in the full pathway | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6837]] |
− | ** ''' | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6920]] |
− | ** '''8''' reactions found over ''' | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
+ | * [[PWY-7291]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7337]] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7338]] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7340]] | ||
+ | ** '''5''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7606]] | ||
+ | ** '''8''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-7726]] | ||
+ | ** '''8''' reactions found over '''13''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=369144}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=350818}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=55.55955 }} |
− | {{#set: organism associated=S. | + | {{#set: organism associated=S.japonica_sterols_curated}} |
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=21}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=22}} |
Revision as of 20:29, 18 December 2020
Contents
Gene SJ19669
- transcription-direction:
- negative
- right-end-position:
- 369144
- left-end-position:
- 350818
- centisome-position:
- 55.55955
Organism(s) associated with this gene
Reaction(s) associated
- ACOAD1f
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACYL-COA-OXIDASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- ACYLCOADEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- BUTYRYL-COA-DEHYDROGENASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-10696
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10706
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10707
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11026
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12518
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12669
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-13449
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14264
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14576
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14771
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14775
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14785
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14789
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14796
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-16134
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-17113
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY-6583
- 6 reactions found over 8 reactions in the full pathway
- PWY-5022
- 3 reactions found over 7 reactions in the full pathway
- PWY-5676
- 4 reactions found over 5 reactions in the full pathway
- P163-PWY
- 3 reactions found over 10 reactions in the full pathway
- PWY-5677
- 1 reactions found over 7 reactions in the full pathway
- CENTFERM-PWY
- 5 reactions found over 7 reactions in the full pathway
- P162-PWY
- 7 reactions found over 11 reactions in the full pathway
- P3-PWY
- 3 reactions found over 11 reactions in the full pathway
- PWY-735
- 16 reactions found over 19 reactions in the full pathway
- PWY-7007
- 4 reactions found over 6 reactions in the full pathway
- PWY-7288
- 4 reactions found over 5 reactions in the full pathway
- PWY-5136
- 5 reactions found over 5 reactions in the full pathway
- PWY66-391
- 6 reactions found over 7 reactions in the full pathway
- PWY-6837
- 4 reactions found over 5 reactions in the full pathway
- PWY-6920
- 5 reactions found over 6 reactions in the full pathway
- PWY-7291
- 2 reactions found over 4 reactions in the full pathway
- PWY-7337
- 6 reactions found over 12 reactions in the full pathway
- PWY-7338
- 6 reactions found over 12 reactions in the full pathway
- PWY-7340
- 5 reactions found over 10 reactions in the full pathway
- PWY-7606
- 8 reactions found over 14 reactions in the full pathway
- PWY-7726
- 8 reactions found over 13 reactions in the full pathway