Difference between revisions of "HMP"

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(Created page with "Category:gene == Gene SJ03371 == * transcription-direction: ** positive * right-end-position: ** 80522 * left-end-position: ** 73478 * centisome-position: ** 60.447365...")
(Created page with "Category:metabolite == Metabolite 4-CYTIDINE-5-DIPHOSPHO-2-C == * common-name: ** 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol * smiles: ** cc(o)(co)c(o)cop(op([o-])(...")
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[[Category:gene]]
+
[[Category:metabolite]]
== Gene SJ03371 ==
+
== Metabolite 4-CYTIDINE-5-DIPHOSPHO-2-C ==
* transcription-direction:
+
* common-name:
** positive
+
** 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol
* right-end-position:
+
* smiles:
** 80522
+
** cc(o)(co)c(o)cop(op([o-])(=o)occ2(c(c(o)c(n1(c(n=c(c=c1)n)=o))o2)o))([o-])=o
* left-end-position:
+
* inchi-key:
** 73478
+
** yfaukwznpvbcff-xhibxcghsa-l
* centisome-position:
+
* molecular-weight:
** 60.447365   
+
** 519.295
== Organism(s) associated with this gene  ==
+
== Reaction(s) known to consume the compound ==
* [[S.japonica_carotenoid_curated]]
+
* [[2.7.1.148-RXN]]
== Reaction(s) associated ==
+
== Reaction(s) known to produce the compound ==
* [[ATPASE-RXN]]
+
* [[2.7.7.60-RXN]]
** Category: [[annotation]]
+
== Reaction(s) of unknown directionality ==
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: common-name=4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol}}
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
{{#set: inchi-key=inchikey=yfaukwznpvbcff-xhibxcghsa-l}}
** Category: [[annotation]]
+
{{#set: molecular-weight=519.295}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-11135]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-12195]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-12196]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN0-5462]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== Pathway(s) associated ==
 
* [[PWY-7210]]
 
** '''8''' reactions found over '''8''' reactions in the full pathway
 
* [[PWY-7198]]
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-7184]]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6545]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
{{#set: transcription-direction=positive}}
 
{{#set: right-end-position=80522}}
 
{{#set: left-end-position=73478}}
 
{{#set: centisome-position=60.447365    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=6}}
 
{{#set: nb pathway associated=4}}
 

Revision as of 20:33, 18 December 2020

Metabolite 4-CYTIDINE-5-DIPHOSPHO-2-C

  • common-name:
    • 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol
  • smiles:
    • cc(o)(co)c(o)cop(op([o-])(=o)occ2(c(c(o)c(n1(c(n=c(c=c1)n)=o))o2)o))([o-])=o
  • inchi-key:
    • yfaukwznpvbcff-xhibxcghsa-l
  • molecular-weight:
    • 519.295

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality