Difference between revisions of "SE-2"

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(Created page with "Category:gene == Gene SJ02445 == * transcription-direction: ** negative * right-end-position: ** 48420 * left-end-position: ** 46095 * centisome-position: ** 33.998127...")
(Created page with "Category:metabolite == Metabolite CPD-15654 == * common-name: ** 2-trans, 4-cis-undecadienoyl-coa * smiles: ** ccccccc=cc=cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(...")
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ02445 ==
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== Metabolite CPD-15654 ==
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* transcription-direction:
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* common-name:
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** negative
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** 2-trans, 4-cis-undecadienoyl-coa
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* right-end-position:
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* smiles:
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** 48420
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** ccccccc=cc=cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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* left-end-position:
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* inchi-key:
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** 46095
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** szkpluulggerfd-nfpsboapsa-j
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* centisome-position:
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* molecular-weight:
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** 33.998127   
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** 927.749
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-14776]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-14775]]
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* [[2.4.1.223-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=2-trans, 4-cis-undecadienoyl-coa}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=szkpluulggerfd-nfpsboapsa-j}}
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* [[2.4.1.94-RXN]]
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{{#set: molecular-weight=927.749}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[3.1.3.16-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11889]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11890]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-15205]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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* [[PWY-6558]]
 
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** '''7''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7437]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=48420}}
 
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{{#set: left-end-position=46095}}
 
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{{#set: centisome-position=33.998127    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=7}}
 
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{{#set: nb pathway associated=2}}
 

Revision as of 20:33, 18 December 2020

Metabolite CPD-15654

  • common-name:
    • 2-trans, 4-cis-undecadienoyl-coa
  • smiles:
    • ccccccc=cc=cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
  • inchi-key:
    • szkpluulggerfd-nfpsboapsa-j
  • molecular-weight:
    • 927.749

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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