Difference between revisions of "RXN-10059"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** left-to-right * common-name: ** carbamoyl phosphate s...") |
(Created page with "Category:reaction == Reaction PROTOHEMEFERROCHELAT-RXN == * direction: ** reversible * common-name: ** ferrochelatase * ec-number: ** [http://enzyme.expasy.org/EC/4.99.1.1...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PROTOHEMEFERROCHELAT-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** ferrochelatase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[FE+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ19310]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ19170]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: |
− | |||
− | |||
** '''5''' reactions found over '''4''' reactions in the full pathway | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
− | * [[ | + | * [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent): |
− | + | ** '''3''' reactions found over '''4''' reactions in the full pathway | |
− | + | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): | |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[ | ||
− | |||
− | |||
− | |||
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P22830 P22830] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P22315 P22315] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P28602 P28602] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q05338 Q05338] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P42043 P42043] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P23871 P23871] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P32396 P32396] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P56107 P56107] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O67083 O67083] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P22600 P22600] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43868 P43868] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P16622 P16622] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q59735 Q59735] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43413 P43413] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P54225 P54225] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P42045 P42045] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O64391 O64391] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P42044 P42044] |
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</div> | </div> | ||
− | {{#set: direction= | + | {{#set: direction=reversible}} |
− | {{#set: common-name= | + | {{#set: common-name=ferrochelatase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-4.99.1.1}} |
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina| | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}} |
Revision as of 20:40, 18 December 2020
Contents
Reaction PROTOHEMEFERROCHELAT-RXN
- direction:
- reversible
- common-name:
- ferrochelatase
- ec-number:
Reaction formula
- 1 PROTOHEME[c] + 2 PROTON[c] <=> 1 FE+2[c] + 1 PROTOPORPHYRIN_IX[c]
Gene(s) associated with this reaction
- Gene: SJ19310
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ19170
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
- 5 reactions found over 4 reactions in the full pathway
- HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
- 3 reactions found over 4 reactions in the full pathway
- HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links