Difference between revisions of "RXN-16997"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.18.1-RXN 3.4.18.1-RXN] == * direction: ** left-to-right * common-name: ** cysteine-type carboxy...") |
(Created page with "Category:reaction == Reaction PHOSPHOGLUCMUT-RXN == * direction: ** reversible * common-name: ** phosphoglucomutase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.2.2 ec...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PHOSPHOGLUCMUT-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** phosphoglucomutase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.4.2.2 ec-5.4.2.2] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[GLC-1-P]][c] '''<=>''' 1 [[D-glucopyranose-6-phosphate]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ05004]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ18341]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12510]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ02279]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ12467]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-6737]], starch degradation V: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7238]], sucrose biosynthesis II: | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7900]], glycogen biosynthesis III (from α-maltose 1-phosphate): | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6731]], starch degradation III: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5941]], glycogen degradation II: | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[GLYCOCAT-PWY]], glycogen degradation I: | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-622]], starch biosynthesis: | ||
+ | ** '''2''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6317]], D-galactose degradation I (Leloir pathway): | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-2723]], trehalose degradation V: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-3801]], sucrose degradation II (sucrose synthase): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7343]], UDP-α-D-glucose biosynthesis I: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5940]], streptomycin biosynthesis: | ||
+ | ** '''2''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-7902]], glucosylglycerol biosynthesis: | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5661]], GDP-glucose biosynthesis: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY66-422]]: | ||
+ | ** '''5''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec- | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23539 23539] |
− | {{#set: nb gene associated= | + | * PIR: |
− | {{#set: nb pathway associated= | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41801 A41801] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A53614 A53614] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B53614 B53614] |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70650 E70650] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64803 G64803] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81947 G81947] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39487 I39487] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I41215 I41215] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRB PMRB] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRBI PMRBI] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRT PMRT] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S10741 S10741] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39397 S39397] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41199 S41199] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41200 S41200] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76847 S76847] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78440 S78440] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04326 T04326] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04327 T04327] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12574 T12574] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52656 T52656] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P36871 P36871] | ||
+ | ** [http://www.uniprot.org/uniprot/P40390 P40390] | ||
+ | ** [http://www.uniprot.org/uniprot/P40391 P40391] | ||
+ | ** [http://www.uniprot.org/uniprot/P95090 P95090] | ||
+ | ** [http://www.uniprot.org/uniprot/P36938 P36938] | ||
+ | ** [http://www.uniprot.org/uniprot/P57002 P57002] | ||
+ | ** [http://www.uniprot.org/uniprot/P38569 P38569] | ||
+ | ** [http://www.uniprot.org/uniprot/P31120 P31120] | ||
+ | ** [http://www.uniprot.org/uniprot/P00949 P00949] | ||
+ | ** [http://www.uniprot.org/uniprot/P38652 P38652] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M2K5 Q7M2K5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q16106 Q16106] | ||
+ | ** [http://www.uniprot.org/uniprot/P33401 P33401] | ||
+ | ** [http://www.uniprot.org/uniprot/P37012 P37012] | ||
+ | ** [http://www.uniprot.org/uniprot/P74643 P74643] | ||
+ | ** [http://www.uniprot.org/uniprot/Q51847 Q51847] | ||
+ | ** [http://www.uniprot.org/uniprot/P93804 P93804] | ||
+ | ** [http://www.uniprot.org/uniprot/P93805 P93805] | ||
+ | ** [http://www.uniprot.org/uniprot/P93262 P93262] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SCY0 Q9SCY0] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00959 R00959] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=phosphoglucomutase}} | ||
+ | {{#set: ec-number=ec-5.4.2.2}} | ||
+ | {{#set: nb gene associated=5}} | ||
+ | {{#set: nb pathway associated=18}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 20:40, 18 December 2020
Contents
Reaction PHOSPHOGLUCMUT-RXN
- direction:
- reversible
- common-name:
- phosphoglucomutase
- ec-number:
Reaction formula
- 1 GLC-1-P[c] <=> 1 D-glucopyranose-6-phosphate[c]
Gene(s) associated with this reaction
- Gene: SJ05004
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ18341
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12510
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ02279
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ12467
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6737, starch degradation V:
- 2 reactions found over 4 reactions in the full pathway
- PWY-7238, sucrose biosynthesis II:
- 5 reactions found over 8 reactions in the full pathway
- GLYCOGENSYNTH-PWY, glycogen biosynthesis I (from ADP-D-Glucose):
- 1 reactions found over 4 reactions in the full pathway
- GLUCOSE1PMETAB-PWY, glucose and glucose-1-phosphate degradation:
- 3 reactions found over 5 reactions in the full pathway
- PWY-7900, glycogen biosynthesis III (from α-maltose 1-phosphate):
- 2 reactions found over 8 reactions in the full pathway
- PWY-6731, starch degradation III:
- 2 reactions found over 4 reactions in the full pathway
- PWY-5941, glycogen degradation II:
- 3 reactions found over 6 reactions in the full pathway
- GLYCOCAT-PWY, glycogen degradation I:
- 6 reactions found over 8 reactions in the full pathway
- PWY-622, starch biosynthesis:
- 2 reactions found over 10 reactions in the full pathway
- PWY-6317, D-galactose degradation I (Leloir pathway):
- 5 reactions found over 5 reactions in the full pathway
- PWY-2723, trehalose degradation V:
- 2 reactions found over 3 reactions in the full pathway
- PWY-3801, sucrose degradation II (sucrose synthase):
- 4 reactions found over 5 reactions in the full pathway
- PWY-7343, UDP-α-D-glucose biosynthesis I:
- 2 reactions found over 2 reactions in the full pathway
- PWY-5940, streptomycin biosynthesis:
- 2 reactions found over 18 reactions in the full pathway
- PWY-7902, glucosylglycerol biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
- PWY-5384, sucrose degradation IV (sucrose phosphorylase):
- 3 reactions found over 4 reactions in the full pathway
- PWY-5661, GDP-glucose biosynthesis:
- 2 reactions found over 3 reactions in the full pathway
- PWY66-422:
- 5 reactions found over n.a reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- PIR:
- UNIPROT:
- LIGAND-RXN: