Difference between revisions of "RXN-14029"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** left-to-right * common-name: ** phytoene synthase * syn...")
(Created page with "Category:reaction == Reaction RXN-16619 == * direction: ** left-to-right * common-name: ** (3r,5z)-3-hydroxy-tetradeca-5-enoyl-[acp] dehydratase * ec-number: ** [http://en...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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== Reaction RXN-16619 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** phytoene synthase
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** (3r,5z)-3-hydroxy-tetradeca-5-enoyl-[acp] dehydratase
* synonymous:
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* ec-number:
** geranylgeranyl-diphosphate geranylgeranyltransferase
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** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
** psase
 
** prephytoene-diphosphate synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
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* 1 [[3R-5Z-3-hydroxy-tetradec-5-enoyl-ACPs]][c] '''=>''' 1 [[2E-5Z-tetradeca-2-5-dienoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ02885]]
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* Gene: [[SJ10275]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5942]], trans-lycopene biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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* [[PWY-7664]], oleate biosynthesis IV (anaerobic):
** '''2''' reactions found over '''2''' reactions in the full pathway
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** '''13''' reactions found over '''14''' reactions in the full pathway
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 
** '''8''' reactions found over '''8''' reactions in the full pathway
 
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=phytoene synthase}}
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{{#set: common-name=(3r,5z)-3-hydroxy-tetradeca-5-enoyl-[acp] dehydratase}}
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase|prephytoene-diphosphate synthase}}
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{{#set: ec-number=ec-4.2.1.59}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=3}}
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{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:40, 18 December 2020

Reaction RXN-16619

  • direction:
    • left-to-right
  • common-name:
    • (3r,5z)-3-hydroxy-tetradeca-5-enoyl-[acp] dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7664, oleate biosynthesis IV (anaerobic):
    • 13 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "(3r,5z)-3-hydroxy-tetradeca-5-enoyl-[acp] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.