Difference between revisions of "RXN-1884"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9650 RXN-9650] == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-numb...") |
(Created page with "Category:reaction == Reaction ARGINASE-RXN == * direction: ** reversible * common-name: ** arginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1] == Rea...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction ARGINASE-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** arginase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1] |
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== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ARG]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-ORNITHINE]][c] '''+''' 1 [[UREA]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ12906]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ00773]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
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== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: |
− | ** ''' | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-4984]], urea cycle: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6305]], superpathway of putrescine biosynthesis: | ||
+ | ** '''4''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec- | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20572 20572] |
− | {{#set: nb gene associated= | + | * LIGAND-RXN: |
− | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00551 R00551] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P05089 P05089] | ||
+ | ** [http://www.uniprot.org/uniprot/P07824 P07824] | ||
+ | ** [http://www.uniprot.org/uniprot/P40906 P40906] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M0Z3 Q7M0Z3] | ||
+ | ** [http://www.uniprot.org/uniprot/P14012 P14012] | ||
+ | ** [http://www.uniprot.org/uniprot/P37818 P37818] | ||
+ | ** [http://www.uniprot.org/uniprot/P49900 P49900] | ||
+ | ** [http://www.uniprot.org/uniprot/P39138 P39138] | ||
+ | ** [http://www.uniprot.org/uniprot/P53608 P53608] | ||
+ | ** [http://www.uniprot.org/uniprot/P72703 P72703] | ||
+ | ** [http://www.uniprot.org/uniprot/O68051 O68051] | ||
+ | ** [http://www.uniprot.org/uniprot/O49046 O49046] | ||
+ | ** [http://www.uniprot.org/uniprot/O76895 O76895] | ||
+ | ** [http://www.uniprot.org/uniprot/P33280 P33280] | ||
+ | ** [http://www.uniprot.org/uniprot/Q10066 Q10066] | ||
+ | ** [http://www.uniprot.org/uniprot/P00812 P00812] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=arginase}} | ||
+ | {{#set: ec-number=ec-3.5.3.1}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=7}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus| | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}} |
Revision as of 20:43, 18 December 2020
Contents
Reaction ARGINASE-RXN
- direction:
- reversible
- common-name:
- arginase
- ec-number:
Reaction formula
- 1 ARG[c] + 1 WATER[c] <=> 1 L-ORNITHINE[c] + 1 UREA[c]
Gene(s) associated with this reaction
- Gene: SJ12906
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00773
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6922, L-Nδ-acetylornithine biosynthesis:
- 5 reactions found over 7 reactions in the full pathway
- PWY-4984, urea cycle:
- 5 reactions found over 5 reactions in the full pathway
- ARG-GLU-PWY, L-arginine degradation VII (arginase 3 pathway):
- 2 reactions found over 2 reactions in the full pathway
- PWY-6305, superpathway of putrescine biosynthesis:
- 4 reactions found over n.a reactions in the full pathway
- ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway):
- 3 reactions found over 4 reactions in the full pathway
- ARGASEDEG-PWY, L-arginine degradation I (arginase pathway):
- 3 reactions found over 3 reactions in the full pathway
- CITRULBIO-PWY, L-citrulline biosynthesis:
- 7 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links