Difference between revisions of "RXN-13482"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-12...") |
(Created page with "Category:reaction == Reaction RXN-12263 == * direction: ** left-to-right * common-name: ** farnesyl-diphosphate farnesyltransferase ** presqualene diphosphate synthase * e...") |
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− | [[Category: | + | [[Category:reaction]] |
− | == | + | == Reaction RXN-12263 == |
− | * | + | * direction: |
− | ** | + | ** left-to-right |
− | |||
* common-name: | * common-name: | ||
− | ** | + | ** farnesyl-diphosphate farnesyltransferase |
− | == Reaction(s) | + | ** presqualene diphosphate synthase |
− | * [[ | + | * ec-number: |
− | == | + | ** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103] |
− | + | == Reaction formula == | |
− | {{#set: | + | * 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c] |
− | {{#set: common-name= | + | == Gene(s) associated with this reaction == |
− | {{#set: nb | + | * Gene: [[SJ13532]] |
− | {{#set: | + | ** Category: [[annotation]] |
− | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02885]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | == Pathway(s) == | ||
+ | * [[PWY-5875]], staphyloxanthin biosynthesis: | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7072]], hopanoid biosynthesis (bacteria): | ||
+ | ** '''1''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | == External links == | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/O69445 O69445] | ||
+ | ** [http://www.uniprot.org/uniprot/P36596 P36596] | ||
+ | ** [http://www.uniprot.org/uniprot/O65688 O65688] | ||
+ | ** [http://www.uniprot.org/uniprot/O23118 O23118] | ||
+ | ** [http://www.uniprot.org/uniprot/O22107 O22107] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40472 Q40472] | ||
+ | ** [http://www.uniprot.org/uniprot/O22106 O22106] | ||
+ | ** [http://www.uniprot.org/uniprot/P53800 P53800] | ||
+ | ** [http://www.uniprot.org/uniprot/P53799 P53799] | ||
+ | ** [http://www.uniprot.org/uniprot/P53798 P53798] | ||
+ | ** [http://www.uniprot.org/uniprot/P29704 P29704] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04903 Q04903] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42761 Q42761] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42760 Q42760] | ||
+ | ** [http://www.uniprot.org/uniprot/P37268 P37268] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02769 Q02769] | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=presqualene diphosphate synthase|farnesyl-diphosphate farnesyltransferase}} | ||
+ | {{#set: ec-number=ec-2.5.1.103}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=4}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}} |
Revision as of 20:46, 18 December 2020
Contents
Reaction RXN-12263
- direction:
- left-to-right
- common-name:
- farnesyl-diphosphate farnesyltransferase
- presqualene diphosphate synthase
- ec-number:
Reaction formula
- 2 FARNESYL-PP[c] => 1 CPD-465[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ13532
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02885
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5875, staphyloxanthin biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-6767, 4,4'-diapolycopenedioate biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-7072, hopanoid biosynthesis (bacteria):
- 1 reactions found over 14 reactions in the full pathway
- PWY-6105, botryococcenes and methylated squalene biosynthesis:
- 2 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- LIGAND-RXN:
- UNIPROT: